LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g05416	ATGTCTCTTGGAGAAACTGCTTGCTCATACGCCCTTCTCATCCTTGAAGATGATAACATTGCCGCAACTGCTGACAACATCACCACTTTGTTGAAAAGTGCAAATGTAGAAGTTGAATCCTTTTGGCCAACCTTATTTGCTAAACTTGCTGAGAAGAAAAATATCAGGGATTTGATTGCCAATGCTGCTGGCGGTGGTGCTCCAGCAGCTGTTGCTGCAGCTCCAGCTGCTTCAGCCGCAGCTGCTCCTGCAGCTGCTGAGAAGAAGGAAGAGCCAAAAGAAGAAGAAGAGAGTGACGAGGAAATGGGATTTGGCTTGTTTGATGATTAG	330	0.4636	MSLGETACSYALLILEDDNIAATADNITTLLKSANVEVESFWPTLFAKLAEKKNIRDLIANAAGGGAPAAVAAAPAASAAAAPAAAEKKEEPKEEEESDEEMGFGLFDD	109

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g05416	109	MobiDBLite	consensus disorder prediction	93	109	-	-
	Trre13g05416	109	FunFam	60S acidic ribosomal protein P1	1	63	-	-
	Trre13g05416	109	Hamap	50S ribosomal protein L12 [rpl12].	6	108	IPR027534	GO:0003735\|GO:0005840\|GO:0006414
	Trre13g05416	109	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN P1	1	108	-	-
	Trre13g05416	109	CDD	Ribosomal_P1	5	107	-	-
	Trre13g05416	109	MobiDBLite	consensus disorder prediction	81	109	-	-
	Trre13g05416	109	Pfam	60s Acidic ribosomal protein	23	107	-	-
	Trre13g05416	109	Gene3D	-	1	62	IPR038716	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g05416	Trre-Chr13	58766494	58767129	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g05416	1	108	Cytoplasmic Ribosomal Protein Gene Family	AT5G24510	53.153	9.86e-34	111

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g05416	K02942		-	gmx:100791962	102.064

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