Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05416 ATGTCTCTTGGAGAAACTGCTTGCTCATACGCCCTTCTCATCCTTGAAGATGATAACATTGCCGCAACTGCTGACAACATCACCACTTTGTTGAAAAGTGCAAATGTAGAAGTTGAATCCTTTTGGCCAACCTTATTTGCTAAACTTGCTGAGAAGAAAAATATCAGGGATTTGATTGCCAATGCTGCTGGCGGTGGTGCTCCAGCAGCTGTTGCTGCAGCTCCAGCTGCTTCAGCCGCAGCTGCTCCTGCAGCTGCTGAGAAGAAGGAAGAGCCAAAAGAAGAAGAAGAGAGTGACGAGGAAATGGGATTTGGCTTGTTTGATGATTAG 330 0.4636 MSLGETACSYALLILEDDNIAATADNITTLLKSANVEVESFWPTLFAKLAEKKNIRDLIANAAGGGAPAAVAAAPAASAAAAPAAAEKKEEPKEEEESDEEMGFGLFDD 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05416 109 MobiDBLite consensus disorder prediction 93 109 - -
Trre13g05416 109 FunFam 60S acidic ribosomal protein P1 1 63 - -
Trre13g05416 109 Hamap 50S ribosomal protein L12 [rpl12]. 6 108 IPR027534 GO:0003735|GO:0005840|GO:0006414
Trre13g05416 109 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 108 - -
Trre13g05416 109 CDD Ribosomal_P1 5 107 - -
Trre13g05416 109 MobiDBLite consensus disorder prediction 81 109 - -
Trre13g05416 109 Pfam 60s Acidic ribosomal protein 23 107 - -
Trre13g05416 109 Gene3D - 1 62 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05416 Trre-Chr13 58766494 58767129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05416 1 108 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 53.153 9.86e-34 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05416 K02942 - gmx:100791962 102.064