LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g05409	ATGGGTTGTTTGGCTACATCATCTTTTCTTTCTAATCAATTGATTCCATTTTCTACAACTATCGTTAATTCTACCACAAACTCCAAATTGGAAGCCAGTTTCCGTAAAGTATACAAAAATACAACCAAAGAAAAATTCTGTCTGGCTTTCTTTAGGGATAATTATGAAGTTAGGATTGGGAGGAATTGTGCAATCAAATCAAGCAGAGGAGTATCTTCTTTGAAAACCCAACAAGAACATGATGGAACTTGGGAAGATGGAACTAGGGAAGAACCAGATATTGGTAGTGACAGTGAGGATGGAAATGAAGAAGAAGATGAGAGCCTTGACGAAGAGACAAAGGCTGGTGTTAATATTAATATTACTTCACAGGATGATGAGTATGAGCGTATTAAGAAAGAGGTTGAACAGCTTTTGGAGCCAGAAGAAATAGAAATATTGCAACAGAATGTGACTCCTAACTTGGAAAAAATATCATCTAAAAAATGGGGCCTACTGCACTCCCTTGCCTTATCATTGCAGATTTATAGCATGGACAAGCTTGTTGAAAATGGTTATGACATTGATTTCCTTAATAAGGAAGGTCTCGCTGCACTTCATAAGGCAATTATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCAAGGATAAGGATGGGGCTACTCCACTCCATTATGCAGTTCAAGTTGGCGCAAAACAAACTGTGAAATTATTGATGAAATACAATGTTGATGTCAATGTTGCAGATAATGAAGGTTGGACCCCATTGCACGTTGCCATTCAAAGCAGAAACAGAGATATTGTGAAAATTTTGATAGGTAACGGCGCATATAGTTTGATAAAAATAAGGTTGAAATCGCTAAACTGGCTGCAGGGCGCATTTGATTGTGGTAGAACTTCATTGATTGATTGA	939	0.3749	MGCLATSSFLSNQLIPFSTTIVNSTTNSKLEASFRKVYKNTTKEKFCLAFFRDNYEVRIGRNCAIKSSRGVSSLKTQQEHDGTWEDGTREEPDIGSDSEDGNEEEDESLDEETKAGVNINITSQDDEYERIKKEVEQLLEPEEIEILQQNVTPNLEKISSKKWGLLHSLALSLQIYSMDKLVENGYDIDFLNKEGLAALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLMKYNVDVNVADNEGWTPLHVAIQSRNRDIVKILIGNGAYSLIKIRLKSLNWLQGAFDCGRTSLID	312

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g05409	312	ProSiteProfiles	Ankyrin repeat profile.	260	285	IPR002110	GO:0005515
	Trre13g05409	312	Pfam	Ankyrin repeat	260	285	IPR002110	GO:0005515
	Trre13g05409	312	PANTHER	ANKYRIN REPEAT FAMILY PROTEIN	124	288	-	-
	Trre13g05409	312	ProSiteProfiles	Ankyrin repeat region circular profile.	260	285	-	-
	Trre13g05409	312	MobiDBLite	consensus disorder prediction	96	111	-	-
	Trre13g05409	312	ProSiteProfiles	Ankyrin repeat profile.	227	259	IPR002110	GO:0005515
	Trre13g05409	312	ProSiteProfiles	Ankyrin repeat region circular profile.	227	259	-	-
	Trre13g05409	312	MobiDBLite	consensus disorder prediction	70	121	-	-
	Trre13g05409	312	MobiDBLite	consensus disorder prediction	79	95	-	-
	Trre13g05409	312	Gene3D	-	128	231	IPR036770	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g05409	Trre-Chr13	58713240	58715699	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g05409	208	301	Ion Channels	AT2G25600	41.489	2.77e-14	71.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g05409	-		-	lja:Lj0g3v0067589.2	331.643

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