Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre13g05408 | ATGGGTTGTTTGGCTACATCATCTTTTCTTTCTAATCAATTGATTCCATTTTCTACAACTATCGTTAATTCTACCACAAACTCCAAATTGGAAGCCAGTTTCCGTAAAGTATACAAAAATACAACCAAAGAAAAATTCTGTCTGGCTTTCTTTAGGGATAATTATGAAGTTAGGATTGGGAGGAATTGTGCAATCAAATCAAGCAGAGGAGTATCTTCTTTGAAAACCCAACAAGAACATGATGGAACTTGGGAAGATGGAACTAGGGAAGAACCAGATATTGGTAGTGACAGTGAGGATGGAAATGAAGAAGAAGATGAGAGCCTTGACGAAGAGACAAAGGCTGGTGTTAATATTAATATTACTTCACAGGATGATGAGTATGAGCGTATTAAGAAAGAGGTTGAACAGCTTTTGGAGCCAGAAGAAATAGAAATATTGCAACAGAATGTGACTCCTAACTTGGAAAAAATATCATCTAAAAAATGGGGCCTACTGCACTCCCTTGCCTTATCATTGCAGATTTATAGCATGGACAAGCTTGTTGAAAATGGTTATGACATTGATTTCCTTAATAAGGAAGGTCTCGCTGCACTTCATAAGGCAATTATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCAAGGATAAGGATGGGGCTACTCCACTCCATTATGCAGTTCAAGTTGGCGCAAAACAAACTGTGAAATTATTGATGAAATACAATGTTGATGTCAATGTTGCAGATAATGAAGGTTGGACCCCATTGCACGTTGCCATTCAAAGCAGAAACAGAGATATTGTGAAAATTTTGATAGGTAACGGCGCATATAGTTTGATAAAAATAAGGCTGGAAAAACAGCACTGGATCTAA | 900 | 0.3733 | MGCLATSSFLSNQLIPFSTTIVNSTTNSKLEASFRKVYKNTTKEKFCLAFFRDNYEVRIGRNCAIKSSRGVSSLKTQQEHDGTWEDGTREEPDIGSDSEDGNEEEDESLDEETKAGVNINITSQDDEYERIKKEVEQLLEPEEIEILQQNVTPNLEKISSKKWGLLHSLALSLQIYSMDKLVENGYDIDFLNKEGLAALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLMKYNVDVNVADNEGWTPLHVAIQSRNRDIVKILIGNGAYSLIKIRLEKQHWI | 299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre13g05408 | 299 | Pfam | Ankyrin repeat | 260 | 285 | IPR002110 | GO:0005515 | |
| Trre13g05408 | 299 | ProSiteProfiles | Ankyrin repeat profile. | 260 | 285 | IPR002110 | GO:0005515 | |
| Trre13g05408 | 299 | Gene3D | - | 232 | 293 | IPR036770 | - | |
| Trre13g05408 | 299 | Gene3D | - | 128 | 231 | IPR036770 | - | |
| Trre13g05408 | 299 | ProSiteProfiles | Ankyrin repeat region circular profile. | 260 | 285 | - | - | |
| Trre13g05408 | 299 | MobiDBLite | consensus disorder prediction | 96 | 111 | - | - | |
| Trre13g05408 | 299 | ProSiteProfiles | Ankyrin repeat region circular profile. | 227 | 259 | - | - | |
| Trre13g05408 | 299 | ProSiteProfiles | Ankyrin repeat profile. | 227 | 259 | IPR002110 | GO:0005515 | |
| Trre13g05408 | 299 | MobiDBLite | consensus disorder prediction | 70 | 121 | - | - | |
| Trre13g05408 | 299 | MobiDBLite | consensus disorder prediction | 79 | 95 | - | - | |
| Trre13g05408 | 299 | ProSiteProfiles | Ankyrin repeat region circular profile. | 194 | 226 | - | - | |
| Trre13g05408 | 299 | SMART | ANK_2a | 260 | 291 | IPR002110 | GO:0005515 | |
| Trre13g05408 | 299 | SMART | ANK_2a | 227 | 256 | IPR002110 | GO:0005515 | |
| Trre13g05408 | 299 | SMART | ANK_2a | 161 | 190 | IPR002110 | GO:0005515 | |
| Trre13g05408 | 299 | SMART | ANK_2a | 194 | 223 | IPR002110 | GO:0005515 | |
| Trre13g05408 | 299 | SUPERFAMILY | Ankyrin repeat | 159 | 286 | IPR036770 | - | |
| Trre13g05408 | 299 | Pfam | Ankyrin repeats (3 copies) | 176 | 258 | IPR002110 | GO:0005515 | |
| Trre13g05408 | 299 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 124 | 287 | - | - | |
| Trre13g05408 | 299 | ProSiteProfiles | Ankyrin repeat profile. | 194 | 226 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre13g05408 | Trre-Chr13 | 58713204 | 58715699 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre13g05408 | 208 | 285 | Ion Channels | AT2G25600 | 44.872 | 2.59e-13 | 68.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre13g05408 | - | - | lja:Lj0g3v0067589.2 | 331.643 |