Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05406 ATGTCAGAAGGTGCAGAGATTGATGAGCGTGTTGACCTCGATGAGGAAAATTATATGGAAGAAGAGATGGACGATGATGTTGAGGAACAGATAGATGACGATGGAGTGGATGTGGATGGGGATGGGGATGGGGGTGAAGATGAAAATGCTGAAGGTAGTGCCGAAGAACATGAATATGAGGAGTCGGCGGCAGAGGCTGGTGATAAAGACCAATTTACCGAAGGAGAAAAAAGTGACCGTGCCACTGAAGAAGATGACCAAAAGCCGTTGCTCATTGATGACGAGGAGAAAGAGAAGCATGATGAACTTCTTTCCCTTCCTCCTCATGGTGCTGAAGTCTTTATTGGTGGACTTCCTCGGGACACACGTGACGATGATATAAGGGAATTGTGCGAGCCAATGGGTGATATTGTTGAGATTAAATTAATCAAAGACAGGGAAACTGGAGAAAGCAAGGGTTATACTTTCGTGACTTTTAAAACGAAGGATGTGGCACAGAAGGCCATCAATGATATACATAACAAGGAATTTAAGGGTAAAACTTTGAGATGTTCGCTGTCTGAAACCAAACACAGGTTGTTCATCGGGAACATTCCAAAAACATGGACGGAGGATGAGTTTAGGAAAGCCGTTGAGGGTGTTGGTCCTGGAGTTGAAGGCATTGACCTCATAAAGGACCCACAAAATCAAAGCAGAAATCGTGGGTTTGCTTTTGTTCTGTATTACAACAATGCATGTGCTGATTATTCACGGCAAAAGATGGCAAGTTCGAATTTCAAGCTAGATGGAAATACACCAACTGTTACATGGGCAGATCCAAAGACCTCACCTGACAATTCAGCTTCTTCGCAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGACCAACTAAAGGAGCTATTTCGTCGTCATGGTGAAGTAACGAAAGTGGTCATGCCACCTGGCAAAGCCGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTTAAAGAGACAGAGAAATATGAAATTGATGGCCAAGCTCTTGAAGTTGTTATTGCCAAGCCTCAAGCTGAAAAAAAACCTGATGGAGGCTATGCGTACAATACTGGACTCCATCCTAACCATCTTCCACATCCTGGCTATGGTAACTTCTCTGGAAATCTATATGGCTCAGTTGGGGCTGGATATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATATGGCAGGGGTCCAATGCCAGCTGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGGTGCCAGCTCCCCGACCCCGCAGAAATGACCGGGGCAATGGTCCAGGCGGTCAGGCAGGGCGTGGAGGAGGTAGTGGTAATGATGATGGAAATCGTAATAGAAGGTATCGACCCTATTAG 1461 0.4504 MSEGAEIDERVDLDEENYMEEEMDDDVEEQIDDDGVDVDGDGDGGEDENAEGSAEEHEYEESAAEAGDKDQFTEGEKSDRATEEDDQKPLLIDDEEKEKHDELLSLPPHGAEVFIGGLPRDTRDDDIRELCEPMGDIVEIKLIKDRETGESKGYTFVTFKTKDVAQKAINDIHNKEFKGKTLRCSLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVEGIDLIKDPQNQSRNRGFAFVLYYNNACADYSRQKMASSNFKLDGNTPTVTWADPKTSPDNSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNTGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAPRPRRNDRGNGPGGQAGRGGGSGNDDGNRNRRYRPY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05406 486 SMART rrm2_1 112 185 IPR003954 GO:0003676
Trre13g05406 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 363 IPR000504 GO:0003723
Trre13g05406 486 SMART rrm1_1 112 185 IPR000504 GO:0003723
Trre13g05406 486 SMART rrm1_1 192 269 IPR000504 GO:0003723
Trre13g05406 486 SMART rrm1_1 287 359 IPR000504 GO:0003723
Trre13g05406 486 Gene3D - 274 391 IPR012677 -
Trre13g05406 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 258 IPR000504 GO:0003723
Trre13g05406 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Trre13g05406 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 356 IPR000504 GO:0003723
Trre13g05406 486 MobiDBLite consensus disorder prediction 1 93 - -
Trre13g05406 486 SUPERFAMILY RNA-binding domain, RBD 192 279 IPR035979 GO:0003676
Trre13g05406 486 MobiDBLite consensus disorder prediction 56 93 - -
Trre13g05406 486 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 192 272 - -
Trre13g05406 486 MobiDBLite consensus disorder prediction 8 55 - -
Trre13g05406 486 CDD RRM_SF 113 185 - -
Trre13g05406 486 Gene3D - 192 272 IPR012677 -
Trre13g05406 486 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 191 - -
Trre13g05406 486 SUPERFAMILY RNA-binding domain, RBD 279 378 IPR035979 GO:0003676
Trre13g05406 486 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 471 - -
Trre13g05406 486 MobiDBLite consensus disorder prediction 445 486 - -
Trre13g05406 486 SUPERFAMILY RNA-binding domain, RBD 109 191 IPR035979 GO:0003676
Trre13g05406 486 Gene3D - 8 191 IPR012677 -
Trre13g05406 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Trre13g05406 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 273 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05406 Trre-Chr13 58701428 58705915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05406 113 462 Eukaryotic Initiation Factors Gene Family AT2G23350 25.455 8.10e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05406 K13161 - gmx:100790907 700.279