Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05400 ATGGGTCAGTGTTACGGGAAGTCAATTCCCGGCGCCGATAACGACCGTGAGCCAAACACAACCACCATAATTGCCACCTCAGAAGACGGCAATCGGACTCCGTTACCATCCGCCGCCAACGGGATTCCGTCTGTCAAAAATACGCCAGCTCGGTCGTCCTCCCACGCTAGTCCATGGCCTAGCCCTTACCCTCATGGAGTAAACCCGAGTCCGTCGCCAGCTAGGGCGTTTACGCCTAGAAGATTTTTCCGGCGGCCGTTTCCACCTCCTTCTCCGGCGAAGCACATAAGGGAGTCTCTAGCGAAGAGGTTAGGGAAGGCAAAGCCGAAAGAAGGGCCAATACCGGAGGAGAGTGGTGTTGAAGCTGATTCACAGTCGTTGGATAAGAGCTTTGGATATAGCAAGAATTTTGGAGCTAAGTATGAGTTGGGGAAAGAAGTAGGAAGAGGGCATTTTGGTCATACTTGTGCTGCTAGGGCCAAGAAGGGTGACCTCAAAGATCAACCTGTTGCTGTTAAGATCATTTCCAAGTCTAAGATGACCTCAGCAATAGCAATTGAAGATGTTCGTAGGGAGGTGAAGCTATTGAAAGCTCTGTCGGGCCATAAGCATCTTGTCAAATTTCACGATGCCTATGAGGATGCCAATAATGTGTACATAGTTATGGAATTGTGTGAAGGCGGGGAGCTTCTTGACCGAATTTTGTCAAGGGGAGGAAGGTATACCGAAGAGGATGCAAAAGTTATTGTTTTGCAGATTCTAAGTGTAGCTGCCTTTTGTCATCTTCAAGGTGTTGTACATCGTGACCTGAAACCTGAGAATTTTCTCTTCACTTCAAGAAGTGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTGTCTGACTTCATTAGACCAGAAGAACGGTTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCTTATAGTGTGGAAGCAGATATATGGAGTATTGGTGTTATCACCTACATTTTATTATGTGGAAGTCGACCATTCTGGGCGCGAACAGAATCAGGAATCTTTCGTACAGTTCTCAGAGCTGATCCTAACTTTGATGATTTACCTTGGCCATCTGTGTCTCCAGAAGGCAAGGACTTTGTTAAAAGGCTCCTAAACAAGGACTACAGGAAAAGAATGACTGCTGCTCAAGCTCTAACTCACCCTTGGTTGAGGGATGAAAGCCGTCCTATTCCTTTAGATATATTAATTTATAAGTTGGTGAAGTCTTATCTTCACGCGACACCATTCAAACGGGCCGCTGTAAAGGCCCTTTCAAAAGCATTGACAGAGGACCAGTTAGTGTATCTTAGAGCGCAATTCAGATTGTTGGAACCAAATAGAGACGGGCACGTCTCCCTCGACAACTTTAAAATGGCTCTTGCACGTCATGCGACTGATGCGATGAGGGAATCAAGGGTTCCTGACATCATACACACGATGGAGCCACTTGCCTATAGAAAGATGGATTTTGAAGAATTTTGTGCAGCTGCAACTAGCACATATCAATTGGAGGCACTTGATAGGTGGGAAGATATCGCCTGCACTGCATTTGAGCATTTTGAGATTGAGGGAAACCGTGTGATATCAATCGAAGAATTAGCAAGAGAGCTAAATCTTGGTCCTTCGGCGTATTCGGTTCTCAGAGATTGGATACGACATACTGACGGAAAGCTTAGTTTACTTGGATATACAAAATTTTTGCATGGCGTGACTATGCGGAGTTCACTTCCAAGACCTCGTTAG 1782 0.4562 MGQCYGKSIPGADNDREPNTTTIIATSEDGNRTPLPSAANGIPSVKNTPARSSSHASPWPSPYPHGVNPSPSPARAFTPRRFFRRPFPPPSPAKHIRESLAKRLGKAKPKEGPIPEESGVEADSQSLDKSFGYSKNFGAKYELGKEVGRGHFGHTCAARAKKGDLKDQPVAVKIISKSKMTSAIAIEDVRREVKLLKALSGHKHLVKFHDAYEDANNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIVLQILSVAAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPEERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITYILLCGSRPFWARTESGIFRTVLRADPNFDDLPWPSVSPEGKDFVKRLLNKDYRKRMTAAQALTHPWLRDESRPIPLDILIYKLVKSYLHATPFKRAAVKALSKALTEDQLVYLRAQFRLLEPNRDGHVSLDNFKMALARHATDAMRESRVPDIIHTMEPLAYRKMDFEEFCAAATSTYQLEALDRWEDIACTAFEHFEIEGNRVISIEELARELNLGPSAYSVLRDWIRHTDGKLSLLGYTKFLHGVTMRSSLPRPR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05400 593 Gene3D - 412 583 - -
Trre13g05400 593 Gene3D Transferase(Phosphotransferase) domain 1 230 411 - -
Trre13g05400 593 FunFam CDPK-related kinase 1 134 229 - -
Trre13g05400 593 SUPERFAMILY EF-hand 429 581 IPR011992 -
Trre13g05400 593 SMART serkin_6 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05400 593 Gene3D Phosphorylase Kinase; domain 1 134 229 - -
Trre13g05400 593 FunFam CDPK-related kinase 3 133 305 - -
Trre13g05400 593 ProSiteProfiles Protein kinase domain profile. 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05400 593 Pfam Protein kinase domain 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05400 593 PANTHER SERINE/THREONINE-PROTEIN KINASE 125 568 - -
Trre13g05400 593 CDD STKc_CAMK 140 402 - -
Trre13g05400 593 MobiDBLite consensus disorder prediction 14 59 - -
Trre13g05400 593 MobiDBLite consensus disorder prediction 96 117 - -
Trre13g05400 593 FunFam CDPK-related kinase 1 439 511 - -
Trre13g05400 593 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Trre13g05400 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Trre13g05400 593 ProSitePatterns Protein kinases ATP-binding region signature. 147 173 IPR017441 GO:0005524
Trre13g05400 593 SUPERFAMILY Protein kinase-like (PK-like) 140 426 IPR011009 -
Trre13g05400 593 MobiDBLite consensus disorder prediction 1 125 - -
Trre13g05400 593 FunFam Calcium-dependent protein kinase SK5 313 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05400 Trre-Chr13 58667927 58674259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05400 23 587 EF-hand Containing Proteins AT3G50530 61.093 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre13g05400 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05400 - - psat:127132076 1093.57