Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05399 ATGAGATCAACCATAGAGATGGGAAGTGATGAGAAAAGTGTGCTTTCGTATCTTCTGCATGGGAAGAAGCAAGAGTTCAGAGATGTACCAAAAGGGTTTCTTGCAATCAAGGTTGGTCAAGGAGAAGATCAACAGAGATTCGTGGTTCCAGTGATATACTTCAATCATCCACTTTTCATGCAACTTCTCAAAGAAGCAGAGGAAGAATATGGATTTGATCATAAAGGACCCATAACCATTCCATGTCATGTTGAAGAATTTAGAAACATTAGAGGTTTGATTGATAGGGAAAAGTCTCTTCATAACAACCATCATGTAAGATGTTTTGGCTTCTGA 336 0.3839 MRSTIEMGSDEKSVLSYLLHGKKQEFRDVPKGFLAIKVGQGEDQQRFVVPVIYFNHPLFMQLLKEAEEEYGFDHKGPITIPCHVEEFRNIRGLIDREKSLHNNHHVRCFGF 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05399 111 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 20 89 IPR003676 GO:0009733
Trre13g05399 111 Pfam Auxin responsive protein 24 90 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05399 Trre-Chr13 58666121 58666617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05399 28 95 Calmodulin-binding Proteins AT3G43120 51.471 3.13e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05399 K14488 - pvy:116108881 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05399 13 58666121 58666617 Trre15g00935 15 7209416 7209739 PCT