Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05396 ATGGGTTCAAATGCCAAAACTTATACTTTTGAGGAAATCGCCAAACACAACAACAAAAAAGATTGCTGGATTATTGTCAATGGAAAGGTGTATGATGTGACCCCATTTTTGGATGATCATCCAGGAGGTGATGAATCTTTAATTTCATCAACAGGGAAGGATGCTACCGTTGATTTTGAAGACGTGGGTCACAGTGACTCTGCCATTGAAATGATGCCTAAATACTTTATTGGGCATGTTGACACATCCACCATTCCAACCGAAGTTAAACATAATCCGCCACCATCTAAACAAACACCCAAAGTTAGCGATCAATCATCAGGATTTGTTTCAAAGGCATTGCAATTCTTGTTGCCGTTACTCATATTGGCCATTGCATTTGCTATGCAGCACTATGGAAAAAAGAAACAAGTCAGCGACTCATAA 426 0.3944 MGSNAKTYTFEEIAKHNNKKDCWIIVNGKVYDVTPFLDDHPGGDESLISSTGKDATVDFEDVGHSDSAIEMMPKYFIGHVDTSTIPTEVKHNPPPSKQTPKVSDQSSGFVSKALQFLLPLLILAIAFAMQHYGKKKQVSDS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05396 141 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Trre13g05396 141 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Trre13g05396 141 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Trre13g05396 141 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Trre13g05396 141 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Trre13g05396 141 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 94 IPR036400 -
Trre13g05396 141 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Trre13g05396 141 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Trre13g05396 141 PANTHER CYTOCHROME B5 4 134 - -
Trre13g05396 141 FunFam Cytochrome b5 type B 2 85 - -
Trre13g05396 141 Gene3D - 2 84 IPR036400 -
Trre13g05396 141 SMART Cyt_b5_2 8 81 IPR001199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05396 Trre-Chr13 58659504 58661441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05396 1 136 NADPH P450 reductases AT5G48810 55.147 4.92e-57 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05396 K23490 - gmx:100306380 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05396 13 58659504 58661441 Trre15g00939 15 7338623 7341630 PCT