Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05391 ATGCCTCTCGATTCATTCACTTCTGGTCCTGCTTTCGAAGCTATTTCTCAAATTACAGACGCCGTTTCCGAGTTTCTACTTGCTTCCGGGGATGTCCTTGTCAAGAAGGGTAGTTTTAAGGAGCTTGGAGATTACTTGCAAAGAATTGCACCTATTTTAAAACAATTGAGGAAAGAAAAGGTCAGTGATTCCGAGACATTCAACAACGCCATTGAGATTCTCAATCGTGAAATCAAAGATGCAAAGAAACTGGTTCAAGAATGTAGCAAGAAGAGCAAGGTATATCTCCTAGTGAACTGCAGAACTGTTGCTAAGCGCTTAAAACACAACACAAGTGAGATCAGCAGGGCTATTGGTCTTCTTCCTTTGGCTACATCAGGCCTTTCTGCTGGAACCATTGAAGAAATCGAAAGGTTACGTGACAATATGCAGGCAGCTGAGTTTAAGGCAGCCGTATCAGAAGAAGAGATATTAGAGAAAATCGAGTTAGGGATACAGGAAAAGAATTTCGACCGCTCCTATGCAAATGATTTGCTGCTTCTCATTGCAGATGCTCTTGGGATTACAAAAGAGCGGTCGACATTAAAGAAAGAGCTTGAAGAGTTTAAAAGTGAAATTGAAAATGAGAAAGACCGGGCTGAAGCCATACAAATGGATCAAATCATTGCTTTGTTGGAAAGGTCTGATGCAGCCTCGTCAACCAGGGAAAAGGAACGCAAATACAAAGAAAAACGAGATTCTCTGGGTACTCAACCCTTGGAGCCTTTACAGTCCTTTTTATGCCCCATTACTCGGGATGTTATGGTTGACCCTGTGGAAACTTCATCCGGGCAAACATTTGAGAGAAGTGCAATTGAAAAGTGGTTTGCAGAAGGACACAAACTGTGTCCTATGTCTCACATTACTTTAGACACGTCAATTTTGAGACCTAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGAAATACAGTGATCACAATTGCTTCAATGAAAGAAAAAATCCAATCTGGAGATGAAGTTGGAGTATTGCATTGCCTGCAAACTCTTCAAGGTTTGTGTGAACAAAAGGACCAGCACAGAGAATGGGTAGTACTGGAGAATTATATACCAGTTCTTATCCAATTTCTTTCTGAAAAAAACCGTGATATAAGGAATCACGTCCTTGTCATCCTTTGCATGCTGATGAAGGATAATGAAGATGCCAAGGAAAGAATTGCAAAAGTAGATAATGCAATTGAGTCTATAGTCCATTCTCTTGGGCGTCGTTTGGGGGAAAGGAAGTTGGCTGTGGCATTACTACTGGAACTATCCAAATATGATTTGTTAAGAGAATATATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAACAGTGAGGACAGTCAAGCTGCCAGAGATGCAACAGAGCTACTGGAGAAGCTTTCATGCTATGATCAGAATGTTATACAGATGGCAAAGGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTGAAGATGATTATGGTCAAAATGCTAGCAGAAATGGAGTCAACAGACCACAATAAGGAGATCTTGTTTGACAGTGGTATTCTGGCTCCTCTTCTTCACTTGGTCTCACATAATGATGTTCAGATGAAATTGGTTGCCCTTAAAGCTCTACAGAATCTATCTAGTTTAAAGAAAAATGGACTCGAAATGATTCGACAAGGTGCAGCGCGCCTATTATTTGGCATTCTTTTCCAGCACAGCCTTCCTTCCTCAAGTTTGTCTGAACATGTAGCTCCCATAATTATGCAACTTGCTGCATCTACCATCTCTCAGGATACACAGACACCGGTTTCATTGTTAGAATCCGACGAAGATGTTTTTAACCTTTTCTCTCTAGTTAGCTACACAGTGCCTGATGTGCGACAATATATTATCCAGACTTTTTATGCCCTGTGTCAGTCGCCGTCAGCTTCAGACATCAAGAACAAGCTAAGAAAGTGCCCATCAGTTCTTGTATTGGTCAAGTTGTTTGAGAATGAAAGCCTAAATCTTCGAGCAAGTTCTGTGAAGCTGTTTTCTTGCCTGGTTGAAATCTGTGATGAAGCCACCATACTGCAGCATGTAAATCAGAAGTGTGTTGAGACTTTACTCCAGATCCTGAAATCTTCATCTGATGAAGAGGAAATTGTTTCTGCAATGGGAATTATACTCTATCTTCCGAAAATTGAACAGATCACTCAGTGGCTTTTGGATGCTGGGGCGTTGCCAATCATTTGTAATTATATCCAAGAAGGGAAGGACAAAGATCTCCAAAAGAGTAAGCTGGTAGAGAATTCTGTTGGTGCCTTATGCCGTTTTACAGTTCCAACAAAATTGGAATGGCAAAAGCGTGCGGCCGAAACTGGGATTATAACTGCTTTAGTACAGTTGCTTGAAACTGGAACTGCTCCAACAAAACAGCTAGCAGCACTGTCCCTAACTCAATTTTCTGAAAGCTCACAAGAACTAAGCAGTCCAATGCCGAAGCGCAAGGGGTTTTGGTGCTTCTCAGCCCAAACAGAAGCTGGATGCTTAGTTCATGGTGGTGTATGCACTGCGGAATCATCATTTTGCCTTTTGGAGGCTGATGCAGTAGGACCACTAGCAAAAACTCTTGGGGAATCTGATTTTGGAGTGTGCGAGACTTCTTTAGATGCTCTTCTAACTTTAATTGATGGGGAAAAGCTGCAGAGTGGTAGTAAAGTGCTTGCAGATAAAAATGTCATACCGCTAATAATAAGATTTCTCGGCTCCCCTTCCCCGGGATTGCAGGAAAAGTCTCTTAATGCTTTGGAAAGGATTTTCCGATTATTGGAGTTCAAACAGAAATACGGAGCTTCAGCTCAAATGCCTCTGGTTGATTTAACTCAGCGGGGTAATGGCAGCATTAAATCCATGGCAGCTCGAATATTGGCACATTTGAATGTGCTTCATGATCAATCTTCATATTTCTAA 3003 0.4123 MPLDSFTSGPAFEAISQITDAVSEFLLASGDVLVKKGSFKELGDYLQRIAPILKQLRKEKVSDSETFNNAIEILNREIKDAKKLVQECSKKSKVYLLVNCRTVAKRLKHNTSEISRAIGLLPLATSGLSAGTIEEIERLRDNMQAAEFKAAVSEEEILEKIELGIQEKNFDRSYANDLLLLIADALGITKERSTLKKELEEFKSEIENEKDRAEAIQMDQIIALLERSDAASSTREKERKYKEKRDSLGTQPLEPLQSFLCPITRDVMVDPVETSSGQTFERSAIEKWFAEGHKLCPMSHITLDTSILRPNKTLKQSIEEWKDRNTVITIASMKEKIQSGDEVGVLHCLQTLQGLCEQKDQHREWVVLENYIPVLIQFLSEKNRDIRNHVLVILCMLMKDNEDAKERIAKVDNAIESIVHSLGRRLGERKLAVALLLELSKYDLLREYIGKVQGCILLLVTMSNSEDSQAARDATELLEKLSCYDQNVIQMAKANYFKHLLQRLSTGPDDVKMIMVKMLAEMESTDHNKEILFDSGILAPLLHLVSHNDVQMKLVALKALQNLSSLKKNGLEMIRQGAARLLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQYIIQTFYALCQSPSASDIKNKLRKCPSVLVLVKLFENESLNLRASSVKLFSCLVEICDEATILQHVNQKCVETLLQILKSSSDEEEIVSAMGIILYLPKIEQITQWLLDAGALPIICNYIQEGKDKDLQKSKLVENSVGALCRFTVPTKLEWQKRAAETGIITALVQLLETGTAPTKQLAALSLTQFSESSQELSSPMPKRKGFWCFSAQTEAGCLVHGGVCTAESSFCLLEADAVGPLAKTLGESDFGVCETSLDALLTLIDGEKLQSGSKVLADKNVIPLIIRFLGSPSPGLQEKSLNALERIFRLLEFKQKYGASAQMPLVDLTQRGNGSIKSMAARILAHLNVLHDQSSYF 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05391 1000 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Trre13g05391 1000 Coils Coil 64 91 - -
Trre13g05391 1000 SMART arm_5 525 565 IPR000225 GO:0005515
Trre13g05391 1000 SMART arm_5 702 741 IPR000225 GO:0005515
Trre13g05391 1000 SMART arm_5 401 441 IPR000225 GO:0005515
Trre13g05391 1000 SMART arm_5 745 791 IPR000225 GO:0005515
Trre13g05391 1000 SMART arm_5 868 908 IPR000225 GO:0005515
Trre13g05391 1000 SMART arm_5 359 399 IPR000225 GO:0005515
Trre13g05391 1000 SMART arm_5 912 952 IPR000225 GO:0005515
Trre13g05391 1000 CDD RING-Ubox_PUB 259 308 IPR045210 -
Trre13g05391 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 333 IPR013083 -
Trre13g05391 1000 Pfam Armadillo/beta-catenin-like repeat 525 565 IPR000225 GO:0005515
Trre13g05391 1000 Gene3D - 856 998 IPR011989 -
Trre13g05391 1000 Coils Coil 136 156 - -
Trre13g05391 1000 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1000 - -
Trre13g05391 1000 Gene3D - 429 616 IPR011989 -
Trre13g05391 1000 Gene3D - 617 851 IPR011989 -
Trre13g05391 1000 Pfam U-box domain 259 325 IPR003613 GO:0004842|GO:0016567
Trre13g05391 1000 SUPERFAMILY ARM repeat 332 990 IPR016024 -
Trre13g05391 1000 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Trre13g05391 1000 Gene3D - 10 126 IPR036537 GO:0007166
Trre13g05391 1000 Coils Coil 192 219 - -
Trre13g05391 1000 SUPERFAMILY RING/U-box 243 327 - -
Trre13g05391 1000 Gene3D - 334 428 IPR011989 -
Trre13g05391 1000 CDD MLKL_NTD 9 145 - -
Trre13g05391 1000 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05391 Trre-Chr13 58636394 58640288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05391 257 1000 U-box Gene Family AT1G76390 27.700 1.33e-55 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05391 - - gmx:100799969 1369.37