Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05378 ATGGGATCAACAACAACAAGGCGCATGTTGTGGGATGAACAAGAGAAATCCATGGTTGCAGCTGTTCTTGGTGGTCGTGCTTTGGATTTTTTGATAACAAACTGTTTATCAAATGAGAGTGTGTTAACTGCTGTTGGTGCTACTGATGATTCTCTTCAAAACAAACTCTCTGATCTCGTTGAAAATTCATCCAATTTCAATTGGAACTATGCTATTTTCTGGCAACTTTCTCAGTCAAAATCCGGTGATTATTTTCTCGGTTGGGGAGATGGGTGTTGCAGAGAACCAAGTGAAGAAGAAGAAAAAGAAAGTGGTGGTGGAGTTATAGGAATTCTCAGTCTTAGCATGGAGAAAGAAGAAGAAGATGAGATGAAGCAGAACATGAGAAAGAGGGTTCTGCAGAAGCTACACACAGCTTTTGGTGGTTCAGATGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACAGAGATGTTCTTTTTAGCTTCTATGTACTTTTCTTTTCCAAAAGGGTATGGTGGACCCGGTAAGTGTTTTGCTTCTGCTAAACATTTATGGTTCAAATCTGTTTCTGATTACTGCGTTCGTTCTTTCTTGGCTAAATCTGCTGGAATTCAAACTGTTGTTTTACTACCTACTCATTTTGGTGTTCTTGAATTGGGTTCTGTTAGAATGTTACCTGAGAATTTTGAATTATTAAACACTGTTAATTCTTTGTTTTCAATTTCCACCACACAATCATCATCATTGTATCCTAGGGTCATCAATGAAGGAAGAGATGAAAGTGAAATTCCAAAGGTTGTTTTGAGTTTGAACAATAATGGTCGTACACATTTTAGGGAGAAACTTGCTATTAGAAAAATGGATCATAGCAGCAGCATTAACTTTCCTAGTGTTAGAAATGGTGTTTGTGGTTCTACTAGTTGGGGAGTGAATCAAGGTCAAGGTGAAATTTTTGCTCCTAATGGTGTGAGAAAGGATTTTAGGCTTAACAATAATAGCAACTATCAACCACAAAGGCAGGTTCAAATGCAAATGGAAATTGATTTTTCGGAAGCGAATTTGAGGGCTAATCCTGTGAGACCGGTTATTGGTGAACCGGAACTTGTTGCTGCTGATGTTGAGGCTGATCAGCCTAGTGATGGAAGGAGGCCGAGGAAGCGCGGAAGGAAGCCTGCTAATGGAAGGGATGAACCGCTTAATCATGTGGAGGCGGAGAGACAAAGGCGTGAGAAGCTTAATCAGCGTTTTTACGCTTTAAGAGCTGTTGTTCCTAACATCTCCAAGATGGACAAGGCATCCTTACTTGGTGATGCCATTGCTTACATCAATGAGCTTCAAGCGAAACTCAAGGTCATGGAGTCTGAGAGAGAGACATTTGGAGGTAGCACTTCAAAGGATGGATCGGGCAACTCTAGCTCAGAAAATCGTCTTCAGAACATTAGAGTTCCTCCTCCTGATGTCGATATTGAAGCTTCTCAGGATGAGGTAATTGTGAAAGTGAGTTGTTCTCTTGATACTCATCCTGTTTCGAAAGTAATGGAAACATTCAAAGAGGCAGAAATCAGTGTTGTGGAGTCGAAACTCGCTGCTGCAAATGATACTATCTACCATACTTTTGTAATTAAGCCACAAGGATCTGAACAGCTTACTAAGGACAAGTTGATTGCAGCTTTTTCCCGAGAATCCAACGCTTTACAGATATAA 1713 0.4051 MGSTTTRRMLWDEQEKSMVAAVLGGRALDFLITNCLSNESVLTAVGATDDSLQNKLSDLVENSSNFNWNYAIFWQLSQSKSGDYFLGWGDGCCREPSEEEEKESGGGVIGILSLSMEKEEEDEMKQNMRKRVLQKLHTAFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPKGYGGPGKCFASAKHLWFKSVSDYCVRSFLAKSAGIQTVVLLPTHFGVLELGSVRMLPENFELLNTVNSLFSISTTQSSSLYPRVINEGRDESEIPKVVLSLNNNGRTHFREKLAIRKMDHSSSINFPSVRNGVCGSTSWGVNQGQGEIFAPNGVRKDFRLNNNSNYQPQRQVQMQMEIDFSEANLRANPVRPVIGEPELVAADVEADQPSDGRRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVMESERETFGGSTSKDGSGNSSSENRLQNIRVPPPDVDIEASQDEVIVKVSCSLDTHPVSKVMETFKEAEISVVESKLAAANDTIYHTFVIKPQGSEQLTKDKLIAAFSRESNALQI 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05378 570 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 399 448 IPR011598 GO:0046983
Trre13g05378 570 PANTHER MYC 40 560 IPR045084 GO:0003700|GO:0006355
Trre13g05378 570 MobiDBLite consensus disorder prediction 460 482 - -
Trre13g05378 570 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 242 IPR025610 -
Trre13g05378 570 Gene3D - 393 462 IPR036638 GO:0046983
Trre13g05378 570 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 402 462 IPR036638 GO:0046983
Trre13g05378 570 CDD bHLH_AtAIB_like 396 460 - -
Trre13g05378 570 MobiDBLite consensus disorder prediction 370 407 - -
Trre13g05378 570 FunFam Transcription factor bHLH13 392 465 - -
Trre13g05378 570 SMART finulus 405 454 IPR011598 GO:0046983
Trre13g05378 570 MobiDBLite consensus disorder prediction 393 407 - -
Trre13g05378 570 Pfam Helix-loop-helix DNA-binding domain 403 449 IPR011598 GO:0046983
Trre13g05378 570 MobiDBLite consensus disorder prediction 459 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05378 Trre-Chr13 58555748 58557460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05378 8 569 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.033 3.85e-177 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g05378 bHLH-MYC_N 8.9e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05378 - - tpra:123889557 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05378 13 58555748 58557460 Trre15g00979 15 7678160 7680043 PCT