Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05375 ATGGAAGCCGAAACTCGCCGGAAAGTTGAAGACATGGTGTTGGATATACTTCAAAAATCCGACATTCAAGAAACCACTGAGTTCACCATCCGAGTTGCCGCCTCTGAGCGACTCGGTATCGACCTCTCCGGTCCAGAGACCAAACGCTTTGTCAGAACTATTATCGAGACTTATCTTCTCTCCATCGCCACCGCTCAGAAATCACCGCCACAACTCTCCACAGAGGTTCCGGTGACACCTAATGAACCACCACAAGTGTCCAATGAACCGGTCAATGTAACCGCACCCAAGGAACCTCCACAAGAGTTGAACAAGGTAGCGGGAGTGAAACGCAAAAACGATGACTCCGATAAAGTTATTTGCCAGTTATCAAGCAGGAGGAATGTGGCGGTTCGAGATTTCAAAGGGATGACATTGGTGTCGATTAGGGAGTTCTATAATAAAGATGGTAAACAGCTTCCCACTTCTAAAGGGATAAGTTTATCTTCTGAACAATGGTCAACCTTCAAGAATTGTGTTCCTGCTATAGAGGAAGCTATCACAAAGTTGGAAGGAAGGATAAGATCAGGGATTAATGGCAAGAAAAATGGAGAAGTTGCAAGTTCAGTTATTGATGTTCCTGTTGAGCCTGTCGCGATTGAGCCCGTCGCTAGTGAGCCCGTCACTATTGAGCCTGTCCCTATTGAGATTGTCCGTTTTGATGGAAAGAATTATCAAGTTTGGGCTGAACAGATGGAATTATTCTTGAAACAGTTAAAGATCAATTATGTGCTTACCGAACCATGCCCAAATGCTACTTTAGCGGAAAAAGTTGCAAGTGCTGGGGAAACCAAAGCTGCTGAAAAGAGATGGCTTCCACTATCCCGGAAAGACTTGTCCATCAAGTTAATGCGTGAGGAGCATCTACCTTTCTGGAAGTTAATGGAATGCATAACAAAAGAGGAAGAATCTCGCAATGGAGTCAAACAAATGGGTGAACTTCCTTCTGATAGTGCAAGATTTCACCGTGCCAATGAAGGGTGGTCGAGCGGGGCTGAAATTAAGCCACCACCAGGTTTTCAAAGGAAGTATGAACCTAATAGCAAGAACGCATCATGTTATATTTGTGGCCAGAAGGGACATTTTTCCAAAAATTGTTGGAGATGGCTGTAA 1152 0.4444 MEAETRRKVEDMVLDILQKSDIQETTEFTIRVAASERLGIDLSGPETKRFVRTIIETYLLSIATAQKSPPQLSTEVPVTPNEPPQVSNEPVNVTAPKEPPQELNKVAGVKRKNDDSDKVICQLSSRRNVAVRDFKGMTLVSIREFYNKDGKQLPTSKGISLSSEQWSTFKNCVPAIEEAITKLEGRIRSGINGKKNGEVASSVIDVPVEPVAIEPVASEPVTIEPVPIEIVRFDGKNYQVWAEQMELFLKQLKINYVLTEPCPNATLAEKVASAGETKAAEKRWLPLSRKDLSIKLMREEHLPFWKLMECITKEEESRNGVKQMGELPSDSARFHRANEGWSSGAEIKPPPGFQRKYEPNSKNASCYICGQKGHFSKNCWRWL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05375 383 SUPERFAMILY Retrovirus zinc finger-like domains 352 379 IPR036875 GO:0003676|GO:0008270
Trre13g05375 383 Gene3D Transcriptional Coactivator Pc4; Chain A 110 188 IPR009044 GO:0003677|GO:0006355
Trre13g05375 383 FunFam RNA polymerase II transcriptional coactivator KELP 111 184 - -
Trre13g05375 383 Pfam Zinc knuckle 366 379 IPR001878 GO:0003676|GO:0008270
Trre13g05375 383 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 186 IPR045125 GO:0003713|GO:0060261
Trre13g05375 383 ProSiteProfiles Zinc finger CCHC-type profile. 366 379 IPR001878 GO:0003676|GO:0008270
Trre13g05375 383 Gene3D - 331 381 - -
Trre13g05375 383 Pfam DEK C terminal domain 5 59 IPR014876 -
Trre13g05375 383 MobiDBLite consensus disorder prediction 69 94 - -
Trre13g05375 383 Pfam Transcriptional Coactivator p15 (PC4) 121 171 IPR003173 GO:0003677|GO:0006355
Trre13g05375 383 MobiDBLite consensus disorder prediction 69 99 - -
Trre13g05375 383 SMART c2hcfinal6 365 381 IPR001878 GO:0003676|GO:0008270
Trre13g05375 383 SUPERFAMILY ssDNA-binding transcriptional regulator domain 120 182 IPR009044 GO:0003677|GO:0006355
Trre13g05375 383 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05375 Trre-Chr13 58523791 58527078 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Trre13g05375 DEK_C 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05375 - - psat:127128865 342.813