Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05374 ATGGACTCTCCATCAGGTGCCCGTCCTAAATTGGCGGCGAAGGGAGGCGATGTCGCCGGAGAGAACCAGATGCCGCCACGGCTTAAGAATCAAATCAAGAACAAAATTGAAGAGGCAGAACAACACAGGTCCAACAATAAGAGGAAGAAGATCGTCGCCGATCTAAGTAACGGATCAGACTCGGAGCTGAATGGAAACTCGATGAGAAAGAAGAAGAAACCGATTGATCAAGAGAAGGAAGGTGATTGTTGCAAGGGATTAATTGATGTGTATAAGGTCAACAAAGCCAAAAATGGAGTTAAAGATACCAAAAAACAGGGTTTATCTAGCAAAACCAAGGAGAGTGGAAGTTTGATGTGTCATCAGTGCCAACGGAACGATAAGAGTGGCGTCGTCTTTTGCTCGAGTTGCAACAGAAAGCGCTATTGTTACGAGTGCATTGAGAACTGGTACCCAGGAAAAACCCGAGAGGACTTCAAGAATGCTTGTCCGTTTTGTCTGGGCAACTGCAACTGCAAAGCTTGCTTGCGGGAGTTTCCTGTGCTAATGGACCGGGAAGTAAATGTCAGTGTCAAATTACAGCGGCTGCTGTACTTGCTATCTAAAGCTCTTCCAGTTCTGAGGCATATCCACAGGGAGCAGAGCTTGGAACTAGAGACTGAAATCAAAATAAGAGGTAAGCAACTGCAAGAAGTTGACATAACAAGAACAAAGCTAGATGAAAGTGAGCGCTTGTACTGTGACAATTGCAGTACATCCATATATGGATTTTACCGTAGCTGCACCAACACAAATTGCTCTTATGATCTCTGTCTTGTGTGCTGTCAAGAGCTCAGAGAGGGTTACCAACCTGGAGGCATGGAGGCTGGAACATCTCATGAAAAATTTGAAGAGATTTTTCACAATCACAATTCAACAAAAAATCAGAGTAAAACACGTCGTAAAAGATATGACTGGGAAAGCGAACTTGCATCTACTAGTGTTCCTTCTCAGGCTGACATGTTCTCTCCCTTCCCAGAATGGAAAGCTAATCCTGATGGTAACATTCCATGTCCTCCAAAGCAGCGTGGAGGTTGTGGTACTGCATTGCTAGAACTGAGACGCATTTACAAAGCTAATTGGGTAGCAAAACTGCTAAATAATGCTGAGGATCTCACTAGAAATTACACGCCTCTGGATGTGGATATTACTGAAAAGTGTTCTTTATGTCAGCTAAATTTGTTTGAAGGAAAAATCAACCCTGACGTCAGGAGGGCAGCATTCCGGGATGACAGTAAAGATAACTTCTTATATAGTCCAAATGCCCTTGACATTTCTGATGATGAGATCGAACACTTTCAGAGGCACTGGATGAGGGGTGAACCTGTGATTGTGAGAAATGTTCTGGCCAAAACGTCTGGTCTTAGTTGGGAACCAATGGTTATGTGGAGGGCCCTCAGAGAAACAGGTTCCAAAGCGAAGTTCAAAGAGGAAACACAAAGTGTTAAGGCTGTAGATTGCTTGGATTGGTGTGGGGTTGAAATAAATATACACCAATTTTTTAAAGGCTATGTAGAAGGCCGAATGCATAAAAATAAGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCGACATCTTTTGAAGAGCGCTTGCCTAGGCATGGCGCTGAATTCCTTGCTGCGCTTCCGTATATGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCCAGTAAACTTCCTGCTGGCTCGTTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGATTTTCTGAAGAGCTTGGCCGAGGAGATTCTGTGACAAAACTGCACTGCGATGTTTCTGATGCGGTGAATGTGTTGACACACACAAACAAGGTGAATATAGCTCCCTGGCAGAGAGAAAGCATAAATAAATTGAAGAAGGAATATGGTAAAGAAGACAATTTTGAACTTTATTGTGAAGCTTTAGATAATGTTGATGGAAAATCTAAATCCAAAGCATCGGACCATGATCAAAAGGCAGGGAATGGAGTTAACCGGATTTCACCAAGTAGCCAAGTAGAAAAGTGCATTTCATCAATATCCGAAGACTTGAGTGGAAAGTTAGAAACACAGAACACAGAACAACGTGATGATAACGGAAAGGGCTCTTGTACCTATAGAAATGTTGCTGTAAGGAACTTCTCTGAGGATGATAGTGTTAGCAATAGCATAACATCATCTGCTGAAGTTTCGGATTATTCCAGGACTTCTGACCTGGAGCATCTTCAATCTGCAACCAGCTTAGCGTCAAATAATGCAAACATAAAGAAAGACAGAACAAGGGTTGATTTTTCAGATGGTAATGTGTCTGGTGATCGCAAGATTGAATCAAAACAAGGCATGGGGAGAGATTCTTTGGACATTGATAATGGAGCTGCGACTGTCCTTGGTGGTGCTGTTTGGGACATCTTCCGTCGGCAAGATGTCCCAAAGATAATTGAGTACTTAAGAAAGCACAAGAAGGAATTTCGCCATATCAACAACAAACCTGTTGATTCAGTTATACATCCCATTCATGATCAGACTATATTCTTAAATGAGAGACACAAGAAACAGCTAAAAAGAGAATTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAACAGACAGTCTTGTATGAAGGTTGCACTTGACTTTGTTTCTCCGGAAAATGTTGGAGAATGTTTACGACTAACTGAAGAGTTTCGTTTACTCCCGAAGAACCACAGGGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGACCCTTTATGCTGTGAGTAATGCTGTTAGACAAGTTAAAGAACTGGTTGATAGCCAATGA 2889 0.4213 MDSPSGARPKLAAKGGDVAGENQMPPRLKNQIKNKIEEAEQHRSNNKRKKIVADLSNGSDSELNGNSMRKKKKPIDQEKEGDCCKGLIDVYKVNKAKNGVKDTKKQGLSSKTKESGSLMCHQCQRNDKSGVVFCSSCNRKRYCYECIENWYPGKTREDFKNACPFCLGNCNCKACLREFPVLMDREVNVSVKLQRLLYLLSKALPVLRHIHREQSLELETEIKIRGKQLQEVDITRTKLDESERLYCDNCSTSIYGFYRSCTNTNCSYDLCLVCCQELREGYQPGGMEAGTSHEKFEEIFHNHNSTKNQSKTRRKRYDWESELASTSVPSQADMFSPFPEWKANPDGNIPCPPKQRGGCGTALLELRRIYKANWVAKLLNNAEDLTRNYTPLDVDITEKCSLCQLNLFEGKINPDVRRAAFRDDSKDNFLYSPNALDISDDEIEHFQRHWMRGEPVIVRNVLAKTSGLSWEPMVMWRALRETGSKAKFKEETQSVKAVDCLDWCGVEINIHQFFKGYVEGRMHKNKWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYMDYTDPKSGLLNFASKLPAGSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIAPWQRESINKLKKEYGKEDNFELYCEALDNVDGKSKSKASDHDQKAGNGVNRISPSSQVEKCISSISEDLSGKLETQNTEQRDDNGKGSCTYRNVAVRNFSEDDSVSNSITSSAEVSDYSRTSDLEHLQSATSLASNNANIKKDRTRVDFSDGNVSGDRKIESKQGMGRDSLDIDNGAATVLGGAVWDIFRRQDVPKIIEYLRKHKKEFRHINNKPVDSVIHPIHDQTIFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCMKVALDFVSPENVGECLRLTEEFRLLPKNHRAKEDKLEVKKMTLYAVSNAVRQVKELVDSQ 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05374 962 MobiDBLite consensus disorder prediction 661 685 - -
Trre13g05374 962 ProSiteProfiles Zinc finger RING-type profile. 120 166 IPR001841 -
Trre13g05374 962 Coils Coil 29 49 - -
Trre13g05374 962 MobiDBLite consensus disorder prediction 775 795 - -
Trre13g05374 962 SUPERFAMILY Clavaminate synthase-like 443 944 - -
Trre13g05374 962 Pfam JmjC domain, hydroxylase 810 908 IPR003347 -
Trre13g05374 962 MobiDBLite consensus disorder prediction 31 55 - -
Trre13g05374 962 CDD cupin_RmlC-like 849 897 - -
Trre13g05374 962 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 117 178 IPR018866 -
Trre13g05374 962 SMART cupin_9 546 925 IPR003347 -
Trre13g05374 962 FunFam Transcription factor jumonji (JmjC) domain-containing protein 747 934 - -
Trre13g05374 962 ProSiteProfiles JmjC domain profile. 565 925 IPR003347 -
Trre13g05374 962 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 32 959 IPR045109 GO:0032454|GO:0033169
Trre13g05374 962 MobiDBLite consensus disorder prediction 1 77 - -
Trre13g05374 962 ProSiteProfiles Ig-like domain profile. 587 734 IPR007110 -
Trre13g05374 962 Gene3D Cupin 434 934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05374 Trre-Chr13 58510138 58521283 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre13g05374 JmjC 2e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05374 K15601 - vvi:100258626 1068.91