Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05370 ATGGAAACAAGTGGTGTTCATAGCAGTATATTGTCATTGACTATGATGGAAGAGGATGAACGTCATCACAATCAGTTTTCTTCAATCTCAAAGCTACACAACAAGGCTCCTATTACTACCAGTGTCCATGATCTTCTCGAATGTCCTGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGTGTCTCAACGGACACACCCTTTGTTCAAATTGTAAGACAAGGGTACACAACAGATGCCCAACTTGCAGGCAAGAGCTAGGTGATATAAGGTGTTTAGCATTGGAGAAGATAGCAGAATCACTTGAATTTCCTTGTAGATACATCTCTCTTGGTTGTTCAGAGATATTTCCATATTATAACAAACTCAAACATGAGTCTATTTGTACCTTTAGACCATACAATTGCCCTTATGCTGGATCAGACTGTTCTTTTGTTGGTAATATTCCATACCTTGTTGCTCATTTAAGGGATGATCATGGTGTTGATATGCATTCTGGATGCACTTTTAACCATCGTTATGTCAAATCAAATCCTATGGAAGTAGAAAATGCTACGTGGATGCTTACGGTTTTCTACTGTTTTGGTCAGTATTTTTGTCTCCATTTTGAAGCATTTCAGCTTGAAATGTCACCTGTTTACATGGCATTTCTTCGATTCATGGGCGACGACCGAGACGCAAAGAACTACAGCTACAGCCTAGAAGTAGGAGGAAATGGACGTAAACTAACATTTGAAGGGAGTCCAAGAAGTATTAGAGATAGTCACAAGAAAATTAAGGATAGTCACGATGGCCTTATTATATACCGCAACATGGCACTTTTCTTCTCAGGCGGGGATAGAAAAGAGTTGAAGCTAAGAGTATCAGGAAGGATATGGAAAGAACAGCAAAACTCTGAAGGTGTAGTGTGCACACCCAACATGTGTAGCTAG 933 0.3987 METSGVHSSILSLTMMEEDERHHNQFSSISKLHNKAPITTSVHDLLECPVCTNSMYPPIHQCLNGHTLCSNCKTRVHNRCPTCRQELGDIRCLALEKIAESLEFPCRYISLGCSEIFPYYNKLKHESICTFRPYNCPYAGSDCSFVGNIPYLVAHLRDDHGVDMHSGCTFNHRYVKSNPMEVENATWMLTVFYCFGQYFCLHFEAFQLEMSPVYMAFLRFMGDDRDAKNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKIKDSHDGLIIYRNMALFFSGGDRKELKLRVSGRIWKEQQNSEGVVCTPNMCS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05370 310 SUPERFAMILY TRAF domain-like 101 293 - -
Trre13g05370 310 FunFam E3 ubiquitin-protein ligase SINAT5-like 157 289 - -
Trre13g05370 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 100 IPR013083 -
Trre13g05370 310 ProSiteProfiles Zinc finger SIAH-type profile. 101 161 IPR013010 GO:0008270
Trre13g05370 310 FunFam E3 ubiquitin-protein ligase SINAT3 98 156 - -
Trre13g05370 310 Pfam Seven in absentia protein family 90 289 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre13g05370 310 ProSiteProfiles Zinc finger RING-type profile. 48 84 IPR001841 -
Trre13g05370 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 171 290 IPR008974 GO:0005515
Trre13g05370 310 CDD RING-HC_SIAHs 46 84 - -
Trre13g05370 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 156 IPR013083 -
Trre13g05370 310 SUPERFAMILY RING/U-box 42 88 - -
Trre13g05370 310 CDD Sina 162 290 - -
Trre13g05370 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 29 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05370 Trre-Chr13 58484614 58486268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05370 28 296 C3H Transcription Factor Family AT2G41980 73.978 1.26e-153 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05370 K04506 - gmx:100782764 588.571