Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05358 ATGATAATTAAGCCTACTTTGAAATCTGGAACGCAGAATCTGAAGCGATGTAAGCTACAACAAGACAAGGATTACGCACCTCCAGTAATTCAGAAGAAGCAGAGACTGAATAGCGGCTTTTATTCGGTCGCTGAAAGTGAAGACTTGAAAATCACTTCTGTATGTGGATCCGGCGAAGGATTCAATTTTGGCGGTGGTGGTGAAATTCACTCCAATTCAGCTCCCATGGAGTTGAAAGCTGTCACCGGAAAAGCACCTCTGTTGTCGCGAACATCGAGAGGCCGTGTTAAAAAAGTTCCATCCAAGTTCAATGATTCAGTTCTTCTCGATCCGAGAAAAAATAATGGACGAATCAATAGATCTGAGGTTGTTTTTGAAGATGAGAATAGTGAAATTGGAGTGGGATTTGTGAATAAAGGAAAGGAAAATAAATTCGATTCAAAAACTGAAAGTGATAATGGTTTTGATGAATTTGACTATGATAAGCATGCTAAGTTGTTCAAGAGCGTTAAAACGACTGTTAGTGGGAGTCGTTTGTCGTTGGTTAAAACCGAGAGTGAAATTGGTTTTGATGAAAAAGATAAAATGGGGCAAGAAATCTATAAGCTAGAGGATTTTGGTTTGGGTGATATAGTTTGGGCAAAATGTGGCAAGAGTTCTCCGGCATGGCCTGCTGTCGTGATTAACCCCATCTTGCAAGCTCCTGAGTCTGTTCTCAAACGTTGTGTTCCCGGTGCCATTTGTGTTATGTTTTTTGGTTATTCGAAAAACGGAAAGCATAGGGACTATGCGTGGCCGAAGCAGGGGATGGTATTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCAGACGCGATTGAACAAGAGCCAACAAAGTGACTTTCACAAGGCAATGGAAGAGGCAGTGTTGGCGGAAGATGGCATCCTGGATCCACACTTTGTAGCTGACCAAGTTGTGGAGGATGCGGGTTCTTGTGCTGATCAGAAATATCATTGCCAAGAACAGGATACAATATCTTGTTATGGCTGTGGTTTGACACTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGCTGTGCTCCTCAGGATTATTGTAAATCTTGTGCAAAGTTACTTAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGCGACAAAATTTCCAGCAAACTTTTGAAGGATCTGGAAAATAAAGATTACTATTGCCCAGATTGCAAGGGAAAGTTGGATCGTAAATCATCAGCATCAAAAACATACAAATCAATAAAATCAGTAGGGAACAACCAAAAAACTGTGTTACCTGAAAAGCTAGCGGTGGTGTGCAATGACATGAAAGGAATTTACTTTCCAAAGCTTCATTCAGTTATCTGCAAGTGTGGCTCGTGTGGGTCAAAGAAGCAGGCGCTGGCTGAATGGGAAAGACATGCAGGTTGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTAGAAGGCACAATGCAATTACTAATAAAATGGATCACAGAACATAATTCCCAATATGGAATTTCCAAGCAGTTAAATCAGAAACAGGTGCTTTCCTTTTTGCAAGAGAAGTATGAGCCAGTTTATGCAAAATGGACAACAGAGAGATGTGCGGTTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATCTGCAACAGATGCCAAGTTGCAGTTCACCAAGAGTGCTATGGGGCAAAGAATGTTCTAGATTTTACTTCCTGGGTTTGTCGAGTGTGTGAAACTCCTGAGGTAGAAAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCACTGAAGCCAACTAATGTTGAGTTGCTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAGTTGTTTTCCGAAACCACGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTCCTCCTACTTCCTTTTTGAAGACTTGTGTGATCTGTAATCAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACATACTTTCATGTGATGTGTGCATCAAGAATGGGATATGGCATGGAATTGCGTTCTACAGTGAAGAAGGGGACTCGAATAACAAAGACGCTAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTAGTGGTTGTGCATACTCCCCTGGGGTTATTCTCTCCAGGAACTTCACTTCAAAATCACAAGGGATGCTTTAGAGGATCAAAGATTATTTCATCAAATAATGTAGAACTCCTTGAACCTTCAACCTCTGAACATTATGAGGTTGAGCCACTATCTGCTGCCAGGTGTCGTGTTTACAAAAGGTCTCCCAATAAGATGAAGGACGGTGTACCAATTATTCACTTGCTTGGGGGGCCAAACCTTCATTCTTTAAGTGCAATAACTCAATTGAACAGCAATAAGGATGCCGGAGTATTTTCTTCATTTAAGGAGCGCCTTCACCATTTACAGAAAACGGAAAATTGTAGAGTTTGCCTCGGAAAATCAGCTATTCAAGGGTGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGTTGAGTACCGTGGTGAGCAGTTAAGGCGCAGTGTTGCTGATCTGAGGGAAGCAAAGTACCGGTTAGAAGGCAAAGATTGTTATCTGTTCAAGATAAGTGAGGAAGTGGTAATTGATGCAACAGATAAGGGAAACATTGCACGTCTAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGTTTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAATATTTCTGCTGGCGAAGAACTAACATATGACTACTTGTTCGATCTAGATGAGCGGGATGAACTCAAGGTTCCCTGCCACTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 2979 0.4203 MIIKPTLKSGTQNLKRCKLQQDKDYAPPVIQKKQRLNSGFYSVAESEDLKITSVCGSGEGFNFGGGGEIHSNSAPMELKAVTGKAPLLSRTSRGRVKKVPSKFNDSVLLDPRKNNGRINRSEVVFEDENSEIGVGFVNKGKENKFDSKTESDNGFDEFDYDKHAKLFKSVKTTVSGSRLSLVKTESEIGFDEKDKMGQEIYKLEDFGLGDIVWAKCGKSSPAWPAVVINPILQAPESVLKRCVPGAICVMFFGYSKNGKHRDYAWPKQGMVFPFLEFMDRFQGQTRLNKSQQSDFHKAMEEAVLAEDGILDPHFVADQVVEDAGSCADQKYHCQEQDTISCYGCGLTLPCKTMKKIKDSSCAPQDYCKSCAKLLKSKQYCGICKKIWHHSDAGDWVCCDGCNVWVHAECDKISSKLLKDLENKDYYCPDCKGKLDRKSSASKTYKSIKSVGNNQKTVLPEKLAVVCNDMKGIYFPKLHSVICKCGSCGSKKQALAEWERHAGCRAKKWKHSVKVEGTMQLLIKWITEHNSQYGISKQLNQKQVLSFLQEKYEPVYAKWTTERCAVCRWVEDWEDNKIIICNRCQVAVHQECYGAKNVLDFTSWVCRVCETPEVERECCLCPVKGGALKPTNVELLWVHVTCAWFRPEVVFRNHEAMEPASGILKIPPTSFLKTCVICNQSHGSCTSCCKCATYFHVMCASRMGYGMELRSTVKKGTRITKTLIYCAVHRVPNPDSVVVVHTPLGLFSPGTSLQNHKGCFRGSKIISSNNVELLEPSTSEHYEVEPLSAARCRVYKRSPNKMKDGVPIIHLLGGPNLHSLSAITQLNSNKDAGVFSSFKERLHHLQKTENCRVCLGKSAIQGWGLFARRDLQEGDMVVEYRGEQLRRSVADLREAKYRLEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCFARIMCLGDQESRIVLIAKTNISAGEELTYDYLFDLDERDELKVPCHCKAPNCRKFMN 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05358 992 CDD SET_SETD1-like 839 988 - -
Trre13g05358 992 ProSiteProfiles Zinc finger PHD-type profile. 377 433 IPR019787 -
Trre13g05358 992 FunFam Histone-lysine N-methyltransferase 612 731 - -
Trre13g05358 992 Pfam PHD-finger 379 432 IPR019787 -
Trre13g05358 992 SUPERFAMILY FYVE/PHD zinc finger 377 436 IPR011011 -
Trre13g05358 992 SMART PWWP_4 206 275 IPR000313 -
Trre13g05358 992 ProSitePatterns Zinc finger PHD-type signature. 563 608 IPR019786 -
Trre13g05358 992 ProSiteProfiles Zinc finger PHD-type profile. 560 611 IPR019787 -
Trre13g05358 992 SMART set_7 850 973 IPR001214 GO:0005515
Trre13g05358 992 Pfam PWWP domain 209 303 IPR000313 -
Trre13g05358 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 730 IPR013083 -
Trre13g05358 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 554 612 IPR013083 -
Trre13g05358 992 SUPERFAMILY FYVE/PHD zinc finger 561 625 IPR011011 -
Trre13g05358 992 SUPERFAMILY SET domain 844 989 IPR046341 -
Trre13g05358 992 PANTHER PHD FINGER PROTEINS 88 411 - -
Trre13g05358 992 SUPERFAMILY Tudor/PWWP/MBT 204 307 - -
Trre13g05358 992 CDD PHD_ATX3_4_5_like 562 608 IPR042011 -
Trre13g05358 992 Pfam SET domain 861 966 IPR001214 GO:0005515
Trre13g05358 992 SMART PostSET_3 976 992 IPR003616 -
Trre13g05358 992 ProSiteProfiles Post-SET domain profile. 976 992 IPR003616 -
Trre13g05358 992 Pfam PHD-zinc-finger like domain 616 728 - -
Trre13g05358 992 FunFam Histone-lysine N-methyltransferase 824 992 - -
Trre13g05358 992 CDD PWWP_AtATX3-like 209 308 - -
Trre13g05358 992 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 992 IPR025780 -
Trre13g05358 992 ProSiteProfiles PWWP domain profile. 208 277 IPR000313 -
Trre13g05358 992 ProSiteProfiles Extended PHD (ePHD) domain profile. 614 729 IPR034732 -
Trre13g05358 992 Pfam PHD-finger 575 609 - -
Trre13g05358 992 Gene3D SET domain 791 992 IPR046341 -
Trre13g05358 992 ProSiteProfiles SET domain profile. 850 967 IPR001214 GO:0005515
Trre13g05358 992 CDD PHD_TCF19_like 380 430 - -
Trre13g05358 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 435 IPR013083 -
Trre13g05358 992 SMART PHD_3 562 609 IPR001965 -
Trre13g05358 992 SMART PHD_3 379 431 IPR001965 -
Trre13g05358 992 SMART PHD_3 673 729 IPR001965 -
Trre13g05358 992 Gene3D - 202 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05358 Trre-Chr13 58442398 58449422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05358 563 715 C2H2 Transcription Factor Family AT3G14740 35.185 2.92e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre13g05358 zf-HC5HC2H_2 9.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05358 - - lja:Lj1g3v5034780.1 1388.63