Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05357 ATGGACATCTTGAAGTTCCTCTTTCACTTGTTCATATTATTTCCTGTCATATATACCTCAGAAGATTATTGTCAAAATTCTTGGTGCAGTGAGAATAACATCCTTATTCGTTTCCCTTTTCAATTAGAAGATGAAGTTGATCAATATCCTTATTGTGGCTATCCTGCTTTCAGCTTAACTTGTACTAATGATAGCAAAACAGTTCTAACACTTCCTTATTCAGGAGTTTTCTATGTTCGCAGAATCGATTATCTCGGACACCACATACAAGTCTATGACCCTCATCATTGCCTTCCAAATCGTCTTCTAAGCCTCAACCTTTCAGGTTCACCTTTCGTTACCGAATTTCTTACCAACTACACCCTCTTGAGTTGCTCAACTCCGAACCTAGGATCGCAATTCACACCCGTTGATTGTCTTAGCAATTCTACACATTTTGTGTCAGCTATTCCTTCATTGAGCTTCACCAAGTCATTGCCTCAGTCTTGCCATGTTATTAGAAATCTCTCAGTTCCAGTTACAACATCATATCCGGAAATTCTCAGCGAAGATCTTCAACTAACATGGTCTTCACCTGATTGTAGATATTGTGAATTACTAGATAGCATGTGTGGATTTGAGAGCAGAAATAGTAATCATGTTCGTTGTTTCCCTAATCACCAAGCGGACCGTTCACAAGATGCTCATTCACATGGCAGTCTTTTGGTTTCAAGAATCATCATATTATCAATTGGGGGAATAGCTATGTTGTGCGCAATTGGGATAGGATGCTTAACGCACTTCAAGCACAGAAGAAGGACAATATCAGATGAACCTGCCATTGACATCACCATTACAAGGATGAGGATGGGTCTAGATGAGTCAACAATTGAGTCTTTTGAGAAGATTGTATTAGGGGAGAGTCGAAGACTTCCGGGAGTAGGACACACTGATGGAACCGGATGTTGTTCAATATGCCTATCAGAGTACAATGGTAAGGACATAATCAGATGCATTCCTGAATGCAAACATTGTTTCCATGCTCACTGCATCGATGAATGGCTTCGCATGAATGCTACATGCCCGATTTGCCGCAACTCTCCCTCCCCTTGTCATTCTCTTCATATATCATAA 1113 0.4034 MDILKFLFHLFILFPVIYTSEDYCQNSWCSENNILIRFPFQLEDEVDQYPYCGYPAFSLTCTNDSKTVLTLPYSGVFYVRRIDYLGHHIQVYDPHHCLPNRLLSLNLSGSPFVTEFLTNYTLLSCSTPNLGSQFTPVDCLSNSTHFVSAIPSLSFTKSLPQSCHVIRNLSVPVTTSYPEILSEDLQLTWSSPDCRYCELLDSMCGFESRNSNHVRCFPNHQADRSQDAHSHGSLLVSRIIILSIGGIAMLCAIGIGCLTHFKHRRRTISDEPAIDITITRMRMGLDESTIESFEKIVLGESRRLPGVGHTDGTGCCSICLSEYNGKDIIRCIPECKHCFHAHCIDEWLRMNATCPICRNSPSPCHSLHIS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05357 370 CDD RING-H2_EL5-like 315 358 - -
Trre13g05357 370 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Trre13g05357 370 SMART ring_2 316 357 IPR001841 -
Trre13g05357 370 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 362 IPR046948 -
Trre13g05357 370 SUPERFAMILY RING/U-box 315 361 - -
Trre13g05357 370 Pfam Wall-associated receptor kinase C-terminal 172 218 IPR032872 -
Trre13g05357 370 Pfam Ring finger domain 316 358 IPR001841 -
Trre13g05357 370 Pfam Wall-associated receptor kinase galacturonan-binding 24 93 IPR025287 GO:0030247
Trre13g05357 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 363 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05357 Trre-Chr13 58439703 58441273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05357 24 363 C3H Transcription Factor Family AT2G46495 40.171 2.05e-77 240