Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05356 ATGGATATCTTAAAGTTCCTCTTTCACTTGTTCATATTATTTCCTGTCATATATACCTCACAAGACTATTGTCAAGATTCTAGGTGTAGTAATAAGGATACCTTCTTTATTCGTTTCCCTTTCCAATTAGAAGTAGAAAGCGATCAACATCCTTATTGTGGTTATTCCGGTTTCAAATTAACATGTACTAATGATAACAAAACAGTTCTAACACTTCCTTATTCAGGCGTGTTCAATGTTCGCAGTATCAACTATCGCAGACAACAGATACAAGTCTATGACCCTCATCATTGCCTTCTAAATCGTCTTCTAAGCCTCAACCTTTCAGGTTCACCTTTCTTTACCGAATTTCTTACTAACTACACTCTCTTAAGCTGCACAACTCGGAACATAGGATTTCAGGTCTATCAAGTTGACTGTCTTAGCAATTTTACACATTTTGTATCAGTTATTCCTTCAGCGAGCTTCACCGATTCTTTGCCTCCGTCTTGCTATATTATTAGAAATCTATCAGTTCCAGTTCCAAGATTTTATCATGAATTCTTCTTAGACAGCCTCAGTGAAGATCTTGAACTAACACGGTCTTCACCGGATTGTAGATATTGTGAATCACAATATGATATGTGCAGATTCGAGAGCAGAAATAGTGATCAAGTTCGTTGTTTCTCTATTAACGAAACAGGTCATTCAAAACATGGGTATAAAATCATCATATTTTCTATTATAGGAATAGCTATGATGTGTGCAATTGGTATTGGGTGCTTAAAGAGATTCAAGCGCGGAAGGACAGTATCAACCGAACCAGCCATTACCAGTAACACTTCAAGGACGGAGGAGGGTATGGATGAGTCGGATGTTGCTCAATATACCTCTCAGAGTACAACATCAAGGACATAA 897 0.3746 MDILKFLFHLFILFPVIYTSQDYCQDSRCSNKDTFFIRFPFQLEVESDQHPYCGYSGFKLTCTNDNKTVLTLPYSGVFNVRSINYRRQQIQVYDPHHCLLNRLLSLNLSGSPFFTEFLTNYTLLSCTTRNIGFQVYQVDCLSNFTHFVSVIPSASFTDSLPPSCYIIRNLSVPVPRFYHEFFLDSLSEDLELTRSSPDCRYCESQYDMCRFESRNSDQVRCFSINETGHSKHGYKIIIFSIIGIAMMCAIGIGCLKRFKRGRTVSTEPAITSNTSRTEEGMDESDVAQYTSQSTTSRT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05356 298 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 291 IPR046948 -
Trre13g05356 298 MobiDBLite consensus disorder prediction 269 298 - -
Trre13g05356 298 Pfam Wall-associated receptor kinase galacturonan-binding 24 94 IPR025287 GO:0030247
Trre13g05356 298 MobiDBLite consensus disorder prediction 284 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05356 Trre-Chr13 58437680 58438690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05356 24 222 C3H Transcription Factor Family AT2G46495 40.686 4.47e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05356 - - tpra:123889576 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05356 13 58437680 58438690 Trre15g01002 15 7842228 7844902 PCT