Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05354 ATGGGAACTTGTTTCTCATCGGGGACACCAGCTGCCGGAGCTGGAAAATTCTATGAGTGTCATCTTTGTGGCAAGCATTTTCATTCAGAGAATGCATTCAAAAATCATCAAACTGATTCTCATCTAGAGGCGGTCTATGAATGCTTCAAATGCATTCGAAAATATGAGACAAAAGCCGAGAGAGAAATTCATGGTAATACAAATGAATGTTCAAAACGTTAG 222 0.3919 MGTCFSSGTPAAGAGKFYECHLCGKHFHSENAFKNHQTDSHLEAVYECFKCIRKYETKAEREIHGNTNECSKR 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05354 73 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 41 IPR013087 -
Trre13g05354 73 SMART c2h2final6 18 41 IPR013087 -
Trre13g05354 73 ProSitePatterns Zinc finger C2H2 type domain signature. 20 41 IPR013087 -
Trre13g05354 73 Pfam Zinc-finger double-stranded RNA-binding 18 37 IPR022755 -
Trre13g05354 73 Gene3D Classic Zinc Finger 6 71 - -
Trre13g05354 73 SUPERFAMILY beta-beta-alpha zinc fingers 15 64 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05354 Trre-Chr13 58430917 58431138 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g05354 zf-C2H2_jaz 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05354 K09228 K24852 rfq:117035459 47.3654