Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05352 ATGGTAAATGATGAGGTGTTGGAGGCTAATGCGGTGCCTTGTTCAGATGCGTTGGAGTATGAAATTAGTGCTCAAGATAATGGCTGTCAGGATTACAAGGTTGATGGCACTGTTACTCAAGCCTCAAATATTGTGAGTTCTGAAATTGTGCCCAATGACATGGAAATTGATGGTTCTCTTGAGCATAAAATGGCTGACATGGAAGAAAGTTTGCCAAGCACTAGTGTTCCCGCAAAGGAGGAGCCTCTGAATTTTGATGATTTTAATTCAGCTGCAGAACTTGAGGTTCTTGGCTTGGAAAATTTGAAGACTGAACTCCAGTCACGTGGGCTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCAAGGCTTTTCCTTTTAAAATCGACTCCCCTGGATAAACTTCCGAAGAAACTGCTAGCAAAGAAATGA 432 0.4282 MVNDEVLEANAVPCSDALEYEISAQDNGCQDYKVDGTVTQASNIVSSEIVPNDMEIDGSLEHKMADMEESLPSTSVPAKEEPLNFDDFNSAAELEVLGLENLKTELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05352 143 PANTHER SPLICING FACTOR SF3A-RELATED 43 142 - -
Trre13g05352 143 Coils Coil 89 109 - -
Trre13g05352 143 Pfam Replication stress response SDE2 C-terminal 73 142 IPR025086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05352 Trre-Chr13 58426724 58427477 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05352 60 142 C2H2 Transcription Factor Family AT5G06160 42.857 1.69e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05352 K25059 - gmx:100781694 143.28