Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05347 ATGGAACAAGAAAAGAGCCAGACGATGTACAATCTCTTCGTTAAGCATTTAGACGGTAAAACCCTAACCCTATTATTCCCTTCTCCGATCCTTTACGCAACTTCGATCAAGGATCGTCTCTTCCAACTCACAGGAATCCCAACCCAACACCAACGCCTCGTCACCGGTTTCCGCCACCTCAACGACGACAAATCAACAATATGTTGTTCGCCGGAAGGAGGGAACATGTTCCCATCTGTGCGTCTTCTTCTTCGTCTGAAAGGTGGAAAAGGAGGATTCGGATCACTGTTGCGTGGAGCAGCGACGAAGGCAGGGCAGAAAAAGACGAACAATTTCGATGCGTGTAGGGATATGAGTGGAAGAAGGTTGAGACATGTAAATGCTGAGAAGAGATTGGAGGAGTGGAGAGCTGGTGAAGAAGATAGAAAGCTTGAGAAGGTTGCGGAGGAGTTTCTGAAGAAACAGATGAAGAAGAATAAAGGTAAGGGTAAGAATGGTGATGTTGATGGTGAAGCTCAGAAGTATGTAGCTAAATATAGGGAACAATCTGAACGTTGTGTTGCGGAGGTTGCTTTGTCTGTTCAGGATTCTCTCAGAAATTCTAAGCGTAAATCTTCGCCTACATCAGAAGCTTCTCTTCCTAGTGATCCCAAGAAATTGAAGATATGGATGGGGAAGAGGACATTGAATGAAAGTGATGATTCTGATGAAGATGTTGATAATGATGAGGGGGAAACCGAGAAATCTGTTCTGTTAAATAGTCAGAATGAGTCTGGGTTAAATAAGGCTGAAGATAGTTCTGATTCTGTGAATGGTCTAAAGCGGGATGGAGAATCTTCTGGGGTCGGCTCGTGTGAGAGTGGATCTGAAGAAGAGAAGGAAACTGTTGAAGAAGGAAAAGTGGAAACTGTTGGAGGATCCCAGAGTAGTGAAACTATTAAGGAAAAACTGAGTGTTGCTGCTGAACCCATGGCAAATGATGAGGTGTTGGAGGCTAATGCGGTGCCTTGTTCAGATGCGTTGGAGTATGAAATTAGTGCTCAAGATAATGGCTGTCAGGATTACAAGGTTGATGGCACTGTTACTCAAGCCTCAAATATTGTGAGTTCTGAAATTGTGCGCAATGACATGGAAATTGATGGTTCTCTTGAGCATAAAACGGCTGGCATTGAAGAAAGTTTGCCAAGCACTAGTGTTCCTGCAAAGGAGGAGCCTCTGAATTTTGATGATTTTAATTCAGCTGCAGAACTTGAGGTTCTTGGCTTGGAAAATTTGAAGACTGAACTCCAGTCACGTGGGCTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCAAGGCTTTTCCTTTTAAAATCGACTCCCCTGGATAAACTTCCGAAGAAACTGCTAGCAAAGAAATGA 1401 0.439 MEQEKSQTMYNLFVKHLDGKTLTLLFPSPILYATSIKDRLFQLTGIPTQHQRLVTGFRHLNDDKSTICCSPEGGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWRAGEEDRKLEKVAEEFLKKQMKKNKGKGKNGDVDGEAQKYVAKYREQSERCVAEVALSVQDSLRNSKRKSSPTSEASLPSDPKKLKIWMGKRTLNESDDSDEDVDNDEGETEKSVLLNSQNESGLNKAEDSSDSVNGLKRDGESSGVGSCESGSEEEKETVEEGKVETVGGSQSSETIKEKLSVAAEPMANDEVLEANAVPCSDALEYEISAQDNGCQDYKVDGTVTQASNIVSSEIVRNDMEIDGSLEHKTAGIEESLPSTSVPAKEEPLNFDDFNSAAELEVLGLENLKTELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05347 466 ProSiteProfiles Ubiquitin domain profile. 10 89 IPR000626 GO:0005515
Trre13g05347 466 MobiDBLite consensus disorder prediction 248 267 - -
Trre13g05347 466 Pfam Silencing defective 2 N-terminal ubiquitin domain 10 160 IPR024974 -
Trre13g05347 466 Gene3D - 2 91 - -
Trre13g05347 466 MobiDBLite consensus disorder prediction 196 213 - -
Trre13g05347 466 Pfam Replication stress response SDE2 C-terminal 392 465 IPR025086 -
Trre13g05347 466 MobiDBLite consensus disorder prediction 196 314 - -
Trre13g05347 466 SUPERFAMILY Ubiquitin-like 6 69 IPR029071 -
Trre13g05347 466 PANTHER SPLICING FACTOR SF3A-RELATED 11 465 - -
Trre13g05347 466 Coils Coil 412 432 - -
Trre13g05347 466 CDD Ubl_ubiquitin_like 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05347 Trre-Chr13 58412472 58414952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05347 384 465 C2H2 Transcription Factor Family AT5G06160 43.902 5.59e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05347 K25059 - gmx:100781694 501.13