Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05346 ATGAATGGAAAAGGACATAAATTTGTGAGGTTCGAGGATTGGAGATCAGAGTCGTCTTTTAGTATAGAGCAGATAGATTCTGTAAATAAAAGAAAAGAGAGACCAAGTGTAAGTTCTATTTTGAAGAGCATTGGAAGAGGATTTGAGAGTGGATCAGAGAAGATGAAGAAATTCATAATACCATCTTCAGCAGTTTATCCAGTAAGTGAAGGACAAACAAAGAAATCGGCTTCTTCTAAGCGCAAAGTTCTTGATCCACAGGGGCCAATGCTTCAGAAATGGAACAAAATATTTGTAATCACATGTGTTATGGCAATTTCTGTGGACCCTCTTTTCTTTTATATTCCGGTGATTGTCGGAAAAAACAAATGTCTTGATTTGGATGAAACGTTGCAGACTACTGCCAGTGTTCTTCGTACATTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTAGAACTGGATTTATTGCACCTTCTTCTCGTGTTTTTGGAAGAGGTGAACTCGTTGACGATCCTGTTGCCATAATGAAACGATATTTGAGTTCTCATTTCATCATCGACATTCTTTCAATTATTCCACTTCCACAGGTTATTGTTTTGGCTATTATTCCAAACTTGAAAAGCACGGGTCCATTTTTGGCAAAGGATTTGTTGAAGTATACAGTATTAATTCAGTATGTGCCGAGACTATTGCGGATTCGTCCACTATTTCAAGAAGTAACTAGAACTTCAGGCATATTGGCGGAGACAGCATGGGCTGGGGCTGTCTTCAATCTTTTACTCTACATGCTAGCCAGTCATGTGGTTGGAGCTAACTGGTATCTGCTTTCGATAGAATCACAAGTGCGGTGTTGGCGCAGAGAGCTAAACAATGCTTCCCTCTTTCATGCATCATATTTGGGCTGTGGACCGCGAAACCAAACAGTCTTCCAACTTCTCAATACTACATGTACTTTTGTTGACCCTGATGAAATCAAGGACACAAAGACCTTTAATTTTGGAATATTTTCCGATGCTCTACAATCACTTGTGATAGATTCAACCACAGAATTTCCACAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAACCTCAAGACAACTACTTACGTTCCGGAGATAGCCTTTGCAATTTTCATTTCCATCTTTGGATTGGTTTTATTCTCATTACTTATTGGAAATATGCAGAAATATTTGGAATCTACAACTGTTAGGGTCGAAGAGATGAGAGTGAAGAGGAGGGATGCAGAACGATGGATGTCTCACCGAATGTTACCTGATAACTTGAAGCAAAGAATTAGAAGTTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAAGAGACTTTAATTCGCACCCTCCCTAAAGATCTCAGAAGAGACATAAAGCGTCATCTTTGCCTAGCTTTAGTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGAGCAATTGTTGGATGCAATGTGTGATAGACTGAAACCAGTTTTGTATACAGAGAAGAGTTGCATTGTCCGTGAAGAAGATCCGGTTGATGAAATGATTTTCATTATGCGTGGAAAAGTCAAAACCATGACAACAAATGGTGGAAGAACCGGTTTCTTCAACTCATTATTTTTAAATCCCGGTGATTTTTGTGGAGAAGAGCTTTTAACTTGGGCTTTGGATCCAAACTCCTCCTCAAATCTACCAACTTCAACTAGAACAGTAGAAACTATATCAGAAGTTGAAGCATTTGCACTCATGGCCGATGATTTGAAGTTTGTTGCTTCCCAATTTAGACGTCTTATCAACAGCAAACAACTTCAACACACTTTCAGGTTATATTCGCCGCAATGGAAGACATGGAGTGTGTGTTTCATACAAGCAGCTTGGCGTCGATACAGGAAAAAGAAGATTGAGAAGACATTGCGTGAAGCCGAAGACAAGCTACAAGATGCTCTAGCAAATGAGGAAGGGTCAACTATAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCAAACGCATTACGAAACTTGAGGGAAAATAACAGACATAACAGAATGCCGCAGAGATTGCTACCTCTTTTGCCACCAAAACCAGCTGAGCCTGATTTCACTACTAAGAAAAACTAG 2157 0.3927 MNGKGHKFVRFEDWRSESSFSIEQIDSVNKRKERPSVSSILKSIGRGFESGSEKMKKFIIPSSAVYPVSEGQTKKSASSKRKVLDPQGPMLQKWNKIFVITCVMAISVDPLFFYIPVIVGKNKCLDLDETLQTTASVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVDDPVAIMKRYLSSHFIIDILSIIPLPQVIVLAIIPNLKSTGPFLAKDLLKYTVLIQYVPRLLRIRPLFQEVTRTSGILAETAWAGAVFNLLLYMLASHVVGANWYLLSIESQVRCWRRELNNASLFHASYLGCGPRNQTVFQLLNTTCTFVDPDEIKDTKTFNFGIFSDALQSLVIDSTTEFPQKFFYCFWWGLRNLSSLGQNLKTTTYVPEIAFAIFISIFGLVLFSLLIGNMQKYLESTTVRVEEMRVKRRDAERWMSHRMLPDNLKQRIRSYEQYKWQENRGVEEETLIRTLPKDLRRDIKRHLCLALVKKVPMFEKMDEQLLDAMCDRLKPVLYTEKSCIVREEDPVDEMIFIMRGKVKTMTTNGGRTGFFNSLFLNPGDFCGEELLTWALDPNSSSNLPTSTRTVETISEVEAFALMADDLKFVASQFRRLINSKQLQHTFRLYSPQWKTWSVCFIQAAWRRYRKKKIEKTLREAEDKLQDALANEEGSTISLGATIYASRFAANALRNLRENNRHNRMPQRLLPLLPPKPAEPDFTTKKN 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05346 718 FunFam Cyclic nucleotide-gated ion channel 1 416 480 - -
Trre13g05346 718 SUPERFAMILY Voltage-gated potassium channels 85 411 - -
Trre13g05346 718 CDD CAP_ED 489 621 IPR000595 -
Trre13g05346 718 Pfam Cyclic nucleotide-binding domain 510 599 IPR000595 -
Trre13g05346 718 SUPERFAMILY cAMP-binding domain-like 418 606 IPR018490 -
Trre13g05346 718 Coils Coil 642 662 - -
Trre13g05346 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 69 713 - -
Trre13g05346 718 MobiDBLite consensus disorder prediction 690 718 - -
Trre13g05346 718 Gene3D - 97 412 - -
Trre13g05346 718 Gene3D Helix hairpin bin 416 480 - -
Trre13g05346 718 ProSiteProfiles cAMP/cGMP binding motif profile. 489 573 IPR000595 -
Trre13g05346 718 FunFam Cyclic nucleotide-gated ion channel 1 487 605 - -
Trre13g05346 718 SMART cnmp_10 489 620 IPR000595 -
Trre13g05346 718 Pfam Ion transport protein 94 417 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre13g05346 718 Gene3D Jelly Rolls 487 607 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05346 Trre-Chr13 58405978 58409277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05346 1 715 Ion Channels AT5G53130 64.177 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05346 K05391 - gmx:100797784 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05346 13 58405978 58409277 Trre15g01006 15 7854010 7857640 PCT