Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05345 ATGGAGGGTTTTCGCCGGATTCTTGTCGGTTTGGACCTTTCTGAGAGAAGACAGAGCTTAAGAGATGAAAACGACCGATCAAGACGACGCCAGTGGTTGGCGAACTGGAGAAAGAGAGAGTTGCAGAACAAGCGAGAGAAGATGGAGTTGCAGAATAGAGAGAAGACAAAAACAGTAAATGATATAAAGAGTGATGTATTCTTGTTTGAGGATTGGAGATCAGAGTCATCTTTTGGTATAGAGGAAAAAGATTATGTAAACAAAAGAAACGAGAGACCAAGTGTAAGTTCTGTTTTGAAGAGTATTGGAAGAAGACTAGAGAGTGGATTAGAGAAGATGAAGAAATTCAGAAGATCATCTTCAGCAGTTTCTTATCTTTTTTTTGAAGAATCTTCAGCAGTTATGCACAAAATTCTTGATCCAAAGGGGCCAATGCTTCAGAAATGGAACCAAATCTTTGTAATCACATGTGTTATGGCAGTTTCTGTGGACCCTCTTTTCTTTTATATTCCAGTGATTGTCGGAAAAAACAAATGTCTTGATTTGGATGAACCGTTGCAGACTATTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACGTTATTTGCATCATCTTTCGATTTAGAACTGGATTTCTTGCGCCTTCTTCTCGTGTTTTTGGAAGAGGTGTACTCGTTGGCGATCCTGTCGCCATAATGAAACGATATTTGAGTTCTCATTTCATCATCGACATTCTTTCAATTATTCCACTTCCACAGGTTATTGTTTTGGCTATAATTCCACACTTGAAAAGCTCAAGGCCGGTTTTGGCGAAGGATTTTTTGAAGTATACAGTATTAATTCAGTATGTGCCAAGACTATTGCGGATTCGTCCACTATACGAAGAAGTAACTAGAACTTCAGGCATATTGGCAGAGACAGCATGGGCTAGGGCTGTCTTCAATCTTTTACTCTACATGCTAGCCAGTCATGTGATTGGAGCTAACTGGTATCTACTTTCGGTAGAATCACAAGTGCGATGTTGGCGCAGAGAGATGAACAATGATTCCCTCTTTCATGCATCATATTTGGGATGTGGACCGCGAAATGAAAGAGTCTTCCCACTTCTCAATAGTACATGTATTTTTGTCGACCCTGATGAAATCAAGGACACAAAGACCTTCAATTTTGGAATATTTTCTGATGCTCTACAATCACTTGTGGTAGATTCAACCACGAAATTTGCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGGGCAATTTAAGTTCTCTTGGACAAAACCTCAAGACAAGTACTTACCTCCTGGAGATAGCCTTTGCGATTTTCATTGCCATCTTTGGATTGGTTTTATTCTCTTTACTTATTGGAAACATGCAGAAATATTTGGAATCTACATCTGTTAGGGTGGAAGAGATGAGAGTGAAGATGAGGGATGCAGAAGCAACAGAACGATGGATGTCTCAACGTATGTTACCTGATAACTTGAAGCAAAGAATTAGAAGTTATGAACAATACAAATGGAAAGAAAATAGAGGTTTTGAAGAAGAGACGTTAATTCGCAAGCTCCCTAAGGATCTCAGAAGAGACATAAAGCGTCATCTTTGCTTGGATTTAGTTAGAAGAGTGCCATTATTTGAGAGAATGGATGAGCAATTGTTGGATGCAATGTGTGATAGAATGAAACCAGTTTTGTATACAGAGAAGAGTTGCATTATCCGTGAAGGAGATCCGGTTGATGAAATGATTTTCATTATGCGTGGAAAAGTCGCTATCATGACAACAAATGATGAAAGAACTGGTTTCTTCAACTCATTCTTTCTAAGACCTGGTGATTTTTGTGGAGAAGAACTTGTAACATGGGCTTTCGATGCACGCCTCACATATCCACCAACTTCAACTAAAACATTAAAAACTATATCAGAAGTTGAAGCATTTGTACTCATGGCTGATGATTTGAAGTTTGTTGTTTCCAAATTTATACATTTTATCGACAGAGAACAACTTCGACACATTTTCAGGGTTTATTCGCCGCAATGGAGGACATGGGGTGCTCGTTTCATACAATTAGCTTGGCGTCGATACTGCAAAAAGAAGATTGAGAGGAAATCGCAAACATCTCTGGTAATCCTTGATGATGACATTGAAGAGAATCATCAAGAACCTGCTTTTAAGAGAAAAAATATTACTCTTGTTTTACCTCCTGCAGAAAAAATATCTAAAGCACCATGGGACAATACTAGGAAACAAGGTCCATTTTCTGATATGGGTCGAGGTTCTAACCCTGCATTTGAAGATATCCGAAAAGAGTTGGCTACTCAAGCCAACACTCAAGCTGAAATGATGAAACAATTGGATGCTATACAGGAACTTCTGATGGAATTAATCTCTAAACAAACCTAG 2409 0.3877 MEGFRRILVGLDLSERRQSLRDENDRSRRRQWLANWRKRELQNKREKMELQNREKTKTVNDIKSDVFLFEDWRSESSFGIEEKDYVNKRNERPSVSSVLKSIGRRLESGLEKMKKFRRSSSAVSYLFFEESSAVMHKILDPKGPMLQKWNQIFVITCVMAVSVDPLFFYIPVIVGKNKCLDLDEPLQTIASVLRTFFDLFYVICIIFRFRTGFLAPSSRVFGRGVLVGDPVAIMKRYLSSHFIIDILSIIPLPQVIVLAIIPHLKSSRPVLAKDFLKYTVLIQYVPRLLRIRPLYEEVTRTSGILAETAWARAVFNLLLYMLASHVIGANWYLLSVESQVRCWRREMNNDSLFHASYLGCGPRNERVFPLLNSTCIFVDPDEIKDTKTFNFGIFSDALQSLVVDSTTKFAQKFFYCFWWGLGNLSSLGQNLKTSTYLLEIAFAIFIAIFGLVLFSLLIGNMQKYLESTSVRVEEMRVKMRDAEATERWMSQRMLPDNLKQRIRSYEQYKWKENRGFEEETLIRKLPKDLRRDIKRHLCLDLVRRVPLFERMDEQLLDAMCDRMKPVLYTEKSCIIREGDPVDEMIFIMRGKVAIMTTNDERTGFFNSFFLRPGDFCGEELVTWAFDARLTYPPTSTKTLKTISEVEAFVLMADDLKFVVSKFIHFIDREQLRHIFRVYSPQWRTWGARFIQLAWRRYCKKKIERKSQTSLVILDDDIEENHQEPAFKRKNITLVLPPAEKISKAPWDNTRKQGPFSDMGRGSNPAFEDIRKELATQANTQAEMMKQLDAIQELLMELISKQT 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05345 802 Gene3D - 151 467 - -
Trre13g05345 802 Gene3D Helix hairpin bin 470 538 - -
Trre13g05345 802 SUPERFAMILY cAMP-binding domain-like 483 665 IPR018490 -
Trre13g05345 802 SUPERFAMILY Voltage-gated potassium channels 140 466 - -
Trre13g05345 802 Pfam Cyclic nucleotide-binding domain 568 658 IPR000595 -
Trre13g05345 802 Coils Coil 465 485 - -
Trre13g05345 802 CDD CAP_ED 547 661 IPR000595 -
Trre13g05345 802 Gene3D Jelly Rolls 545 663 IPR014710 -
Trre13g05345 802 SMART cnmp_10 547 677 IPR000595 -
Trre13g05345 802 Pfam Ion transport protein 149 472 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre13g05345 802 ProSiteProfiles cAMP/cGMP binding motif profile. 547 618 IPR000595 -
Trre13g05345 802 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 129 709 - -
Trre13g05345 802 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05345 Trre-Chr13 58396956 58401462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05345 69 697 Ion Channels AT5G53130 59.404 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05345 K05391 - gmx:100797784 886.33