Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05338 ATGGAAAAAACTACTAAGAGAAAACGTGTTAGTCTGATCAATGAATTGATCCAAGGAAAGGAGCTAGCAAAGCAGCTAAGTAACCATATAGTTTTATCATCCAATGAAACCAATGAATTCTTGATTGACAAAATAATTTCCACCTATCAGAAAACACTTACTATGCTCAACCATTGGCCTAATGTGCAACAAGAGAATAAGACCATTGATGATAACATGAAGGATTCTCATTCTTCTTTTACAAATGAAAGTCCCAAAAGTGAAGTTATTATTAAGCACAAACCTCTCTTCAAGAAAAGGAAGAGCATGCCAACATGGAAAGAGCAAGTGAAGATTTGCACAAACACAGGATTGTTTGAAGGGTCTTTGGATGATGAATATAGCTGGAGAAAATATGGTCAAAAGGATATTCTTGGAGCTAAGTTTTCAAGAGGATATTACAGATGCACACATAGAAATGGACAAGGGTGTCTAGCAACAAAACAAGTTCAAAGGTCAGATGAAGATCCAACAATAATTGAGGTTACTTACAGAGGAAGACACACATGCTCTCAATCTAAGCCTTCAAAAAAGGATTTTCCCTCAAAATTAAAGATAATAAATCCATCAAAGAGTGATAAAAAGAATCAACTACAAACACAAGAGGCTAGTTTCACTTTGAAAGAAGAACTTGATGTGAAAAGAATGGACTTAGAAGAAACCAAAAAAGATATCTTCCCTTGGTTTTGTTTTTCTGATGCATTCATATCACCAGAAACTTCAGAATCAAACTTTTTTGGTTTATCAGAATATCAATTGGGCTGCATTGGATTATGCCAAAATGTACAAACTTCAGAATCTGATATCACTGAGACAGTTTCAGCCACAACTTCAGTCACCAATTCACCAATCCTTGATTTGGATATCTTGCTACATAGAGGAGATTTTGACACTCATTTTCCTTTTAACACCCCTGAATATTTCTCTTCATAA 972 0.3477 MEKTTKRKRVSLINELIQGKELAKQLSNHIVLSSNETNEFLIDKIISTYQKTLTMLNHWPNVQQENKTIDDNMKDSHSSFTNESPKSEVIIKHKPLFKKRKSMPTWKEQVKICTNTGLFEGSLDDEYSWRKYGQKDILGAKFSRGYYRCTHRNGQGCLATKQVQRSDEDPTIIEVTYRGRHTCSQSKPSKKDFPSKLKIINPSKSDKKNQLQTQEASFTLKEELDVKRMDLEETKKDIFPWFCFSDAFISPETSESNFFGLSEYQLGCIGLCQNVQTSESDITETVSATTSVTNSPILDLDILLHRGDFDTHFPFNTPEYFSS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05338 323 Gene3D WRKY domain 110 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g05338 323 SMART WRKY_cls 123 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g05338 323 ProSiteProfiles WRKY domain profile. 123 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g05338 323 SUPERFAMILY WRKY DNA-binding domain 122 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g05338 323 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 227 IPR044810 GO:0003700
Trre13g05338 323 FunFam WRKY transcription factor 53 108 186 - -
Trre13g05338 323 Pfam WRKY DNA -binding domain 124 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05338 Trre-Chr13 58350715 58352147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05338 8 314 WRKY Transcription Factor Family AT4G11070 38.535 1.28e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g05338 WRKY 6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05338 - - mtr:11429817 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05338 13 58350715 58352147 Trre15g01027 15 8014358 8016593 PCT