Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g05338 | ATGGAAAAAACTACTAAGAGAAAACGTGTTAGTCTGATCAATGAATTGATCCAAGGAAAGGAGCTAGCAAAGCAGCTAAGTAACCATATAGTTTTATCATCCAATGAAACCAATGAATTCTTGATTGACAAAATAATTTCCACCTATCAGAAAACACTTACTATGCTCAACCATTGGCCTAATGTGCAACAAGAGAATAAGACCATTGATGATAACATGAAGGATTCTCATTCTTCTTTTACAAATGAAAGTCCCAAAAGTGAAGTTATTATTAAGCACAAACCTCTCTTCAAGAAAAGGAAGAGCATGCCAACATGGAAAGAGCAAGTGAAGATTTGCACAAACACAGGATTGTTTGAAGGGTCTTTGGATGATGAATATAGCTGGAGAAAATATGGTCAAAAGGATATTCTTGGAGCTAAGTTTTCAAGAGGATATTACAGATGCACACATAGAAATGGACAAGGGTGTCTAGCAACAAAACAAGTTCAAAGGTCAGATGAAGATCCAACAATAATTGAGGTTACTTACAGAGGAAGACACACATGCTCTCAATCTAAGCCTTCAAAAAAGGATTTTCCCTCAAAATTAAAGATAATAAATCCATCAAAGAGTGATAAAAAGAATCAACTACAAACACAAGAGGCTAGTTTCACTTTGAAAGAAGAACTTGATGTGAAAAGAATGGACTTAGAAGAAACCAAAAAAGATATCTTCCCTTGGTTTTGTTTTTCTGATGCATTCATATCACCAGAAACTTCAGAATCAAACTTTTTTGGTTTATCAGAATATCAATTGGGCTGCATTGGATTATGCCAAAATGTACAAACTTCAGAATCTGATATCACTGAGACAGTTTCAGCCACAACTTCAGTCACCAATTCACCAATCCTTGATTTGGATATCTTGCTACATAGAGGAGATTTTGACACTCATTTTCCTTTTAACACCCCTGAATATTTCTCTTCATAA | 972 | 0.3477 | MEKTTKRKRVSLINELIQGKELAKQLSNHIVLSSNETNEFLIDKIISTYQKTLTMLNHWPNVQQENKTIDDNMKDSHSSFTNESPKSEVIIKHKPLFKKRKSMPTWKEQVKICTNTGLFEGSLDDEYSWRKYGQKDILGAKFSRGYYRCTHRNGQGCLATKQVQRSDEDPTIIEVTYRGRHTCSQSKPSKKDFPSKLKIINPSKSDKKNQLQTQEASFTLKEELDVKRMDLEETKKDIFPWFCFSDAFISPETSESNFFGLSEYQLGCIGLCQNVQTSESDITETVSATTSVTNSPILDLDILLHRGDFDTHFPFNTPEYFSS | 323 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g05338 | 323 | Gene3D | WRKY domain | 110 | 186 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Trre13g05338 | 323 | SMART | WRKY_cls | 123 | 185 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre13g05338 | 323 | ProSiteProfiles | WRKY domain profile. | 123 | 181 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre13g05338 | 323 | SUPERFAMILY | WRKY DNA-binding domain | 122 | 185 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Trre13g05338 | 323 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 10 | 227 | IPR044810 | GO:0003700 | |
Trre13g05338 | 323 | FunFam | WRKY transcription factor 53 | 108 | 186 | - | - | |
Trre13g05338 | 323 | Pfam | WRKY DNA -binding domain | 124 | 183 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g05338 | Trre-Chr13 | 58350715 | 58352147 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g05338 | 8 | 314 | WRKY Transcription Factor Family | AT4G11070 | 38.535 | 1.28e-45 | 154 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Trre13g05338 | WRKY | 6e-26 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g05338 | - | - | mtr:11429817 | 489.189 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre13g05338 | 13 | 58350715 | 58352147 | Trre15g01027 | 15 | 8014358 | 8016593 | PCT |