Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05318 ATGGGAACAAGTGAGGAAGAGAAATCTACCAAGATTGAAAAGCCTTCTTCACCTTTAACAGCGGATCAGACCAACAACCAGGCAAATATTCATGTCTATCCTGATTGGGCCGCCATGCAGGCATATTATGGGCCAAGAGTTGCCATGCCACCATACTACAATTCACCTGTGGCTTCTGGTCACACCCCTCACCCATATATGTGGGGGCCACCACAGCCTATGATGCCACCTTATGGACATCCTTATGCAGCTATGTATCCTCATGGAGGGGTTTATACTCACCCTGCAGTTCCTATTGGGTCACATCCACATAGTCAAGGAATTTCATCTTCACCTGTTACTGGAACTCCTTTAAGCATAGAGACACCTCCCAAATCATCTGGAAATACTGATCAGGGTCTGATGAAGAAATTGAAAGGGTTTGATGGACTTGCGATGTCAATAGGCAATGGCCATGCTGAGAGTGCAGAGCCTGGAGCTGAAAGCAAGCTATCACAGAGCGTGGATACTGACGGTTCAAGCGATGGAAGTGACAGCAACACTTCAGGGGCTAATCAAACAAGAAGGAAAAGAAGCCGTGAGGGAACACCAACCACTGATGGAGAAGGGAAAACTCATACACAAGATAGTCAACTGTCCAAAGAAATCGCAGCTTCTAATAAGTTGATGGCAGCTGGACCGGCAGTTTCTTCAGCGATGACCACTGCATTGGAGCTGAAAAATCCTTCCAATGTTAAATCTAAAACAAATCCAACAAGTGTCCCACAACCTTCTGCTGTGTTACCTCCAGAGGCTTGGATACAGAATGAGCGTGAACTGAAACGTGAGAGGAGGAAACAATCAAATCGTGAATCTGCTAGGAGGTCAAGACTAAGGAAGCAGGCTGAGGCCGAAGAATTGGCACGAAAAGTTGAAGCCTTGAATGCTGAGAGTGCGTCACTTAAATCAGAAATAAATCGACTTGCTGAGAGTTCTGAAAAACTGAGGATGGAAAATGCTGCATTGAAGGAAAAATTCAAAACTGCTCAACTCGGACAACCAAAAGAGATAATTTTAAGCAGCATCGACAGCCAAAGGATTACACCTGTAAGTACAGAAAACTTATTATCGAGAGTTAATAATAATTCGGGTTCTAATGATAGAGCCATGGAGGATGAGAATGGTTATTGTGACAACAAACCAAACTCTGGTGCAAAGCTGCATCAATTACTGGATACAAGTCCTAGAGCTGATGCTGTAGCTGCTGGTTGA 1251 0.4452 MGTSEEEKSTKIEKPSSPLTADQTNNQANIHVYPDWAAMQAYYGPRVAMPPYYNSPVASGHTPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVPIGSHPHSQGISSSPVTGTPLSIETPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEPGAESKLSQSVDTDGSSDGSDSNTSGANQTRRKRSREGTPTTDGEGKTHTQDSQLSKEIAASNKLMAAGPAVSSAMTTALELKNPSNVKSKTNPTSVPQPSAVLPPEAWIQNERELKRERRKQSNRESARRSRLRKQAEAEELARKVEALNAESASLKSEINRLAESSEKLRMENAALKEKFKTAQLGQPKEIILSSIDSQRITPVSTENLLSRVNNNSGSNDRAMEDENGYCDNKPNSGAKLHQLLDTSPRADAVAAG 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05318 416 Coils Coil 283 338 - -
Trre13g05318 416 MobiDBLite consensus disorder prediction 234 255 - -
Trre13g05318 416 Gene3D - 273 327 - -
Trre13g05318 416 Pfam bZIP transcription factor 270 332 IPR004827 GO:0003700|GO:0006355
Trre13g05318 416 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 277 292 IPR004827 GO:0003700|GO:0006355
Trre13g05318 416 MobiDBLite consensus disorder prediction 103 133 - -
Trre13g05318 416 Pfam Disordered region downstream of MFMR 131 251 - -
Trre13g05318 416 MobiDBLite consensus disorder prediction 201 217 - -
Trre13g05318 416 SUPERFAMILY Leucine zipper domain 273 329 IPR046347 GO:0003700|GO:0006355
Trre13g05318 416 SMART brlzneu 270 334 IPR004827 GO:0003700|GO:0006355
Trre13g05318 416 MobiDBLite consensus disorder prediction 97 135 - -
Trre13g05318 416 MobiDBLite consensus disorder prediction 1 26 - -
Trre13g05318 416 MobiDBLite consensus disorder prediction 160 186 - -
Trre13g05318 416 MobiDBLite consensus disorder prediction 148 297 - -
Trre13g05318 416 MobiDBLite consensus disorder prediction 268 297 - -
Trre13g05318 416 CDD bZIP_plant_GBF1 275 323 IPR045314 GO:0003700|GO:0006355
Trre13g05318 416 MobiDBLite consensus disorder prediction 370 416 - -
Trre13g05318 416 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 272 335 IPR004827 GO:0003700|GO:0006355
Trre13g05318 416 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 382 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre13g05318 416 Pfam G-box binding protein MFMR 1 98 IPR012900 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05318 Trre-Chr13 58234930 58238166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05318 1 416 bZIP Transcription Factor Family AT2G46270 54.137 3.66e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g05318 MFMR_assoc 6.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05318 K09060 - gmx:100781875 654.44