Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05317 ATGGGAACAAGTGAGGAAGAGAAATCTACCAAGATTGAAAAGCCTTCTTCACCTTTAACAGCGGATCAGACCAACAACCAGGCAAATATTCATGTCTATCCTGATTGGGCCGCCATGCAGGCATATTATGGGCCAAGAGTTGCCATGCCACCATACTACAATTCACCTGTGGCTTCTGGTCACACCCCTCACCCATATATGTGGGGGCCACCACAGCCTATGATGCCACCTTATGGACATCCTTATGCAGCTATGTATCCTCATGGAGGGGTTTATACTCACCCTGCAGTTCCTATTGGGTCACATCCACATAGTCAAGGAATTTCATCTTCACCTGTTACTGGAACTCCTTTAAGCATAGAGACACCTCCCAAATCATCTGGAAATACTGATCAGGGTCTGATGAAGAAATTGAAAGGGTTTGATGGACTTGCGATGTCAATAGGCAATGGCCATGCTGAGAGTGCAGAGCCTGGAGCTGAAAGCAAGCTATCACAGAGCGTGGATACTGACGGTTCAAGCGATGGAAGTGACAGCAACACTTCAGGGGCTAATCAAACAAGAAGGAAAAGAAGCCGTGAGGGAACACCAACCACTGCAGATGGAGAAGGGAAAACTCATACACAAGATAGTCAACTGTCCAAAGAAATCGCAGCTTCTAATAAGTTGATGGCAGCTGGACCGGCAGTTTCTTCAGCGATGACCACTGCATTGGAGCTGAAAAATCCTTCCAATGTTAAATCTAAAACAAATCCAACAAGTGTCCCACAACCTTCTGCTGTGTTACCTCCAGAGGCTTGGATACAGAATGAGCGTGAACTGAAACGTGAGAGGAGGAAACAATCAAATCGTGAATCTGCTAGGAGGTCAAGACTAAGGAAGCAGGCTGAGGCCGAAGAATTGGCACGAAAAGTTGAAGCCTTGAATGCTGAGAGTGCGTCACTTAAATCAGAAATAAATCGACTTGCTGAGAGTTCTGAAAAACTGAGGATGGAAAATGCTGCATTGAAGGAAAAATTCAAAACTGCTCAACTCGGACAACCAAAAGAGATAATTTTAAGCAGCATCGACAGCCAAAGGATTACACCTGTAAGTACAGAAAACTTATTATCGAGAGTTAATAATAATTCGGGTTCTAATGATAGAGCCATGGAGGATGAGAATGGTTATTGTGACAACAAACCAAACTCTGGTGCAAAGCTGCATCAATTACTGGATACAAGTCCTAGAGCTGATGCTGTAGCTGCTGGTTGA 1254 0.4458 MGTSEEEKSTKIEKPSSPLTADQTNNQANIHVYPDWAAMQAYYGPRVAMPPYYNSPVASGHTPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVPIGSHPHSQGISSSPVTGTPLSIETPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEPGAESKLSQSVDTDGSSDGSDSNTSGANQTRRKRSREGTPTTADGEGKTHTQDSQLSKEIAASNKLMAAGPAVSSAMTTALELKNPSNVKSKTNPTSVPQPSAVLPPEAWIQNERELKRERRKQSNRESARRSRLRKQAEAEELARKVEALNAESASLKSEINRLAESSEKLRMENAALKEKFKTAQLGQPKEIILSSIDSQRITPVSTENLLSRVNNNSGSNDRAMEDENGYCDNKPNSGAKLHQLLDTSPRADAVAAG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05317 417 Gene3D - 274 328 - -
Trre13g05317 417 MobiDBLite consensus disorder prediction 371 417 - -
Trre13g05317 417 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 273 336 IPR004827 GO:0003700|GO:0006355
Trre13g05317 417 MobiDBLite consensus disorder prediction 103 133 - -
Trre13g05317 417 Coils Coil 284 339 - -
Trre13g05317 417 MobiDBLite consensus disorder prediction 269 300 - -
Trre13g05317 417 SUPERFAMILY Leucine zipper domain 274 330 IPR046347 GO:0003700|GO:0006355
Trre13g05317 417 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 383 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre13g05317 417 MobiDBLite consensus disorder prediction 97 135 - -
Trre13g05317 417 SMART brlzneu 271 335 IPR004827 GO:0003700|GO:0006355
Trre13g05317 417 CDD bZIP_plant_GBF1 276 324 IPR045314 GO:0003700|GO:0006355
Trre13g05317 417 MobiDBLite consensus disorder prediction 201 218 - -
Trre13g05317 417 MobiDBLite consensus disorder prediction 1 26 - -
Trre13g05317 417 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 278 293 IPR004827 GO:0003700|GO:0006355
Trre13g05317 417 Pfam G-box binding protein MFMR 1 98 IPR012900 -
Trre13g05317 417 Pfam Disordered region downstream of MFMR 131 252 - -
Trre13g05317 417 Pfam bZIP transcription factor 271 333 IPR004827 GO:0003700|GO:0006355
Trre13g05317 417 MobiDBLite consensus disorder prediction 160 186 - -
Trre13g05317 417 MobiDBLite consensus disorder prediction 235 256 - -
Trre13g05317 417 MobiDBLite consensus disorder prediction 148 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05317 Trre-Chr13 58234930 58238166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05317 1 417 bZIP Transcription Factor Family AT2G46270 54.009 2.70e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g05317 MFMR_assoc 6.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05317 K09060 - gmx:100781875 649.818