Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05306 ATGAATTGCTTTCCTTGTTTTACCTCTCAAAAGAGTAAAAAAAGCAATAGCAAGAGGGAACATGGGGTTGCACAACCACAGGAAAACAACAACCTTATAACAAGAACACCAGATATCAAGAAACCAAAGGCAGAAGATCCAAACCAAGTTGATACATCAAATATTCAAGCACAAAATTTCACTTTCCGTGAGTTAGCAATTGCAACAAAGAATTTTCGCCAAGAATGTTTGTTGGGAGAAGGTGGTTTTGGCAGAGTTTACAAAGGAACAATTCCTGCAACTGGACAGGTGATAGCAGTGAAACAACTTGACCGAAATGGGATTCACGGCAGTAAAGAATTTCTGGTTGAGGTTTTGATGTTGAGTCTCTTAAACCATGAAAATCTTGTCAAACTCACCGGTTATTGTGCTGATGGTGATCAACGTCTTTTGGTCTATGAATTCATGCCAGCCGGATCTCTAGAAACTCGTCTTCTTGATAGAAAACCTGATCAAGCACCATTAGATTGGTATGACAGAATGAAAATAGCATCTAATGTTGCAAAAGGACTATGGTACTTGCATGACAAGGCAAATCCCTCAGTTATATATAGGGACTTGAAATCGTCAAACATCTTGCTTGATAATGAACTTCATGCAAAACTATCTGATTATGGACTTGCAAAACTTGCTGGCAAAGATAAGATGAACATTGTTCCTACAAGAGTCATGGGTACTTATGGTTATAGTGCCCCCGAGTATGTAAGAACAGGTAATCTCACTTTGAAGTCAGATGTATACAGTTTTGGAGTTGTCTTGCTAGAGCTCATAACTGGAAGACGAGCTGTTGATACCACAAGATCGCACGACGAGCAAAATCTAGTTTCATGGGCACAACCAATATTTAGAGATCCGAAAAAATATGGAGATTTGGCTGATCCAAATCTCGGTACAAATTACCCGGAAAAGGATCTGAATCAAGTTGTTGCAATTGCTGCCATGTGCTTACAGGAGGAATCAGCAGCGCGTCCTTTGATGAGCGATGTAGTAACTGCTTTGAGTTTTCTTTCTACTTCTCCTCCTCCTCAAGGCACTGCTCCTGCACCAACTCCACCTCCCAAATCCACCTCTCAGAAGAGTGTTTCCACTGCCAACGAAAGTGAGAGTGACAGCGGAAGTTCTGATGAAGAGCGTTCAGTTCATGGGGACAATCATGATATTGCAGCAGCTAGTGGAAAATACGAAGAATGTGACGATGCATCATCAGACAGTGAAAGTGATTATTATGAGAATGAAAACCAACATGATTATAGTCCACAAGATGATAAAGAAACAAAGGAGTTCTACTCCAAATCAAGCAACAAAAGCAGTAACAAGTCAAAGAAAAGTTCCAGTTCGAAAAAGCATGGGGCGGATGGAATTTTAACTCAGAAAAGCAGTAAAAAATCTGCTGCAAAGCAGAAGAGCAGTAAGAAATCTCCAAAGGATTTAAGCCAAAGGAGCAGTAAAAAATCTTCTGCAAGAAAATCATCTCATAGCAGCAGCGACGAGGAGTCACGGGATGGAGGTGTTCTTCTCAAGCGCGGTGACAGTAGGCCATCAAATGATGGAAATGGATATTCTTTTGGCCTAACAAGCAGTGATAGCGGGGAAGTATCACGTTCAGATGTTCATCATTTTGATCGCATGAGCATGGGGACATCCGAGGAAGGAAGTTTTCACCGTTTAGAACATTCCAGCAGCAGAGGATCAGATGAGGGAAGTGTTCATTCATCGTAA 1758 0.4113 MNCFPCFTSQKSKKSNSKREHGVAQPQENNNLITRTPDIKKPKAEDPNQVDTSNIQAQNFTFRELAIATKNFRQECLLGEGGFGRVYKGTIPATGQVIAVKQLDRNGIHGSKEFLVEVLMLSLLNHENLVKLTGYCADGDQRLLVYEFMPAGSLETRLLDRKPDQAPLDWYDRMKIASNVAKGLWYLHDKANPSVIYRDLKSSNILLDNELHAKLSDYGLAKLAGKDKMNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRSHDEQNLVSWAQPIFRDPKKYGDLADPNLGTNYPEKDLNQVVAIAAMCLQEESAARPLMSDVVTALSFLSTSPPPQGTAPAPTPPPKSTSQKSVSTANESESDSGSSDEERSVHGDNHDIAAASGKYEECDDASSDSESDYYENENQHDYSPQDDKETKEFYSKSSNKSSNKSKKSSSSKKHGADGILTQKSSKKSAAKQKSSKKSPKDLSQRSSKKSSARKSSHSSSDEESRDGGVLLKRGDSRPSNDGNGYSFGLTSSDSGEVSRSDVHHFDRMSMGTSEEGSFHRLEHSSSRGSDEGSVHSS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05306 585 SUPERFAMILY Protein kinase-like (PK-like) 58 372 IPR011009 -
Trre13g05306 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Trre13g05306 585 MobiDBLite consensus disorder prediction 349 585 - -
Trre13g05306 585 SMART serkin_6 72 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05306 585 MobiDBLite consensus disorder prediction 1 53 - -
Trre13g05306 585 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Trre13g05306 585 Gene3D Phosphorylase Kinase; domain 1 35 148 - -
Trre13g05306 585 MobiDBLite consensus disorder prediction 462 476 - -
Trre13g05306 585 PANTHER OS07G0668900 PROTEIN 3 354 - -
Trre13g05306 585 MobiDBLite consensus disorder prediction 421 443 - -
Trre13g05306 585 MobiDBLite consensus disorder prediction 384 412 - -
Trre13g05306 585 Pfam Protein kinase domain 74 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05306 585 MobiDBLite consensus disorder prediction 368 382 - -
Trre13g05306 585 MobiDBLite consensus disorder prediction 22 36 - -
Trre13g05306 585 MobiDBLite consensus disorder prediction 527 544 - -
Trre13g05306 585 FunFam Serine/threonine-protein kinase PBS1 149 360 - -
Trre13g05306 585 CDD STKc_IRAK 78 346 - -
Trre13g05306 585 MobiDBLite consensus disorder prediction 482 520 - -
Trre13g05306 585 Gene3D Transferase(Phosphotransferase) domain 1 149 350 - -
Trre13g05306 585 FunFam probable serine/threonine-protein kinase RLCKVII 44 148 - -
Trre13g05306 585 ProSiteProfiles Protein kinase domain profile. 72 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05306 Trre-Chr13 58168057 58170669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05306 1 393 Glycoside Hydrolase AT3G07070 60.250 5.74e-169 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre13g05306 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05306 - - gmx:100807682 665.611