Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05305 ATGCCATTTGGTGAATGTGGGAATGTGAAAGAGGATATAAGCAAATGGGGCAGCGGTTTTCCGACCACAATATGCTGTCGAAATGCACTCACCCTTTTATCAGATGCCATGGCCTCACAAGCCCGTAACAGAACAGGACAAGTGTTCCTTTCTCAAGAACAATGGCAAAGTTGCAACACATCATTTCATCCACAACAAGGGATGTCAATGTCTTCATGTGGATTTGATAACATTTACTTTGGTAGCTCCAAATGCTCCAGCTTAGCTTTGCTAGATGTTCAGGGCTTGCAACCTTACGCAGATGCATTGAACCAATGCAGCCACTTTGATCATTCGTTCGATGTGTCGTGTGCAGAATGTACAAGTGCAATATTGAACCTGAGAGATGATTTGTATGCTATAAAAGTTGACAAGGACAACAATGACACTGAGAGAGCCATATGTGGTGTAGCAGCTCTTGTTTCTGTTGTAGCTGAACAAAAAGATGATCCTTTCCTTGCAGACAAATTCTTGCGCTGTTTGCCACCTCCAGCAGCAGTAAATATGAAGAGATCATCAAACAAGAAACTTGTGTTGGGAGTACTCGTGGTAGCTATCGTAGCATTATTGGTGATTTTTTTTCTGGTAAAATGTGTATCAAAGAAGAAGCCTATTAAGAAGAAGCATGTTCAATTGAAACAGATAACTACTTGGTCTGGATTGTACTGGTTTACAAAAACTGAAATTGAAAATGCAATGAATTTTGAAGATGAAAAGATAAACCTTGGACGTGGGAGTGCAGGCGAGGTTTATAGAGGCGTTTTGCCTAGTGGTCAAGTTGTAGCCATCAAGCATTTGATAAAGAATAACACCTCTAGTTCTGATTCTTTCACTCGAGAACTCGCTGGTCTTTCGAGGCTTCGTCATCCAAACCTTGTTTGCTTGTTTGGTTGTTGTATGGAAGATGGTGAAAGATATTTAGTCTATGAATTTTGCCCCAATGGAAATCTTGCTCAACATCTCTTGAGAAGAGACAGCCATTTGACATGGGAAACAAGAGTGAGGATTTTGAAAGAATGCTCATTTGCACTTAAGTACCTTCATCAACATATAGAGGGTTGTGTTGTCCATAGAGATATCAAGCTTACAAACATTCTTTTGACTGAGAAATACGAAGCCAAACTGTCGGATTTTGGTTTGTCAAGGATGATGGGGATGGAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACCATTGGTTACATGGATCCGGAGTATATGAGCAATGCAAAGCTAACGTGTGCCAGTGATGTATATAGTTTCGGAATTGTTGCTTTGCAAATTCTATCTGGACAGAAAGTCATAGAATTGGATCTTGATGCTAGAGATCAACTCACCAGAAAGGCGAGAGATGTGAGTTTGGGAAAGCGTCCATTATCGGATTTTGTAGACTCGCGACTAAAGGGACAAGTTGATAAGGATGATTTTGGAGACATTTTACAAATTGCTGTACTTTGTGTTGCCAAATCAAGCGCAGGACGCCCAACAATTGGAGTTGTTTTTGACGAATTGGACAAAGTCTACGGGAACATAGAGGCGCGCAATAAGGCAACCCCATCAACGACAACATCAACATCTAGCTCTAATTGA 1629 0.4082 MPFGECGNVKEDISKWGSGFPTTICCRNALTLLSDAMASQARNRTGQVFLSQEQWQSCNTSFHPQQGMSMSSCGFDNIYFGSSKCSSLALLDVQGLQPYADALNQCSHFDHSFDVSCAECTSAILNLRDDLYAIKVDKDNNDTERAICGVAALVSVVAEQKDDPFLADKFLRCLPPPAAVNMKRSSNKKLVLGVLVVAIVALLVIFFLVKCVSKKKPIKKKHVQLKQITTWSGLYWFTKTEIENAMNFEDEKINLGRGSAGEVYRGVLPSGQVVAIKHLIKNNTSSSDSFTRELAGLSRLRHPNLVCLFGCCMEDGERYLVYEFCPNGNLAQHLLRRDSHLTWETRVRILKECSFALKYLHQHIEGCVVHRDIKLTNILLTEKYEAKLSDFGLSRMMGMEESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSLGKRPLSDFVDSRLKGQVDKDDFGDILQIAVLCVAKSSAGRPTIGVVFDELDKVYGNIEARNKATPSTTTSTSSSN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05305 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Trre13g05305 542 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 14 522 - -
Trre13g05305 542 Gene3D Phosphorylase Kinase; domain 1 219 324 - -
Trre13g05305 542 Gene3D Transferase(Phosphotransferase) domain 1 325 539 - -
Trre13g05305 542 Pfam SPARK 6 141 IPR043891 -
Trre13g05305 542 FunFam probable receptor-like protein kinase At5g59700 325 536 - -
Trre13g05305 542 SUPERFAMILY Protein kinase-like (PK-like) 231 518 IPR011009 -
Trre13g05305 542 SMART serkin_6 248 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05305 542 Pfam Protein kinase domain 254 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05305 542 ProSiteProfiles Protein kinase domain profile. 249 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05305 Trre-Chr13 58165098 58167254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05305 237 533 Receptor kinase-like Gene Family AT1G16260 36.789 3.94e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Trre13g05305 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05305 - - vum:124837890 738.028