Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05301 ATGGCGGCGGCGGCGAAGAAAAGAGATGAATCATCGGAATTAAAAGAGCGATTATGGAAACTCGTTAAAACTATCGTCGACTCCGATGACTATACTTTGCAAATCGCCGATGATGCAATCGCTACTCTTTCTTCTCTAAAGGATTTCAAATTCAACAAGTCTCGTAGTAATAATAATAATAATGGAACAAAAAACTCTTTCTCTTCTAAATTGGACCAATTTACCCTTCCTCCTGAATTTCGTTGCCCTATTTCCACTCAGTTGATGATCGATCCTGTTATCTTGTCCACCGGTCAGACTTATGATCGGCCATTTATTCAGAGGTGGTTGAATGAAGGCAATAGGACATGCCCTCAAACCCAGCAAGTTCTATCTCATACAATTCTTACTCCTAATTATTTGGTCCGAGACATGATTGCGCAGTGGTGTAAGGAGCGTGGATTTGAGCTACCAAAGGCTAATACTCGGGACACGGATGAAGTTGTGACAGATGCAGACAAAGACCGTTTAAATACATTGCTTCATAAGTTGTCATTGTCTGTTTCTGATCAGAAAGCAGCTGCGAAGGAGCTACGCTTGTTAACGAAGCGAACACCATCCTTTCGAACTCTTTTTAAGGAGTCTGGTGATGTGATCACACAGTTGCTTCGTCCATTATCGCCGGGCAGTGCTTGTACTCACCCTGATCTTCAAGAGGATTTGATCACAACTGTTCTGAATCTCTCAATTCATGATGATAATAAGAAAGTGTTTGCAGAAGATCCAAACCTCATTAACCTGCTGATTGATGCCTTGAAATGGGGAACCATTCAAACAAAAAGCAATGCTGCAGCAGCTATTTTCACATTATCAGCTCTTGATTCCAACAAGCACATCATTGGAAAATCTGGAGCTATCAAATATTTGATTGCCGTTCTAGATGAGGGACATCAAATTGCTATGAAAGATGCCGCATCAGCCATATTTAACCTATGTCTTGTCCACGAGAATAAAGGGAGGACAGTACGAGAAGGGGCGGTTAAGGTCATTTTGAATAAGATCATGAACCACATTCTAGTTGATGAGCTCTTGGCTATACTGGCACTCCTCTCCAGTCATCCCACAGCTGTTGAAGAAATGGGCTATCGCGGAGCCGTTTCTTTCTTACTGAGTACTATAAGGGAAAGCACATCAGAAAGGTGCAAGGAAAATTGTGTTGCAATCCTATATACAATCTGTTATAGTGATAGAACAAAGTGGAAGGAAATCAAAGAAGAAGAAAAGACCAATGGTTCACTGTCGAAGCTTGCACAATGCGGAACTTCAAGGGCGAAAAGGAAGGCTAGCAGTATTCTAGAGAGGGTTAACCGATCTCCATCGTTAACTCACACTGCTTAG 1377 0.4183 MAAAAKKRDESSELKERLWKLVKTIVDSDDYTLQIADDAIATLSSLKDFKFNKSRSNNNNNGTKNSFSSKLDQFTLPPEFRCPISTQLMIDPVILSTGQTYDRPFIQRWLNEGNRTCPQTQQVLSHTILTPNYLVRDMIAQWCKERGFELPKANTRDTDEVVTDADKDRLNTLLHKLSLSVSDQKAAAKELRLLTKRTPSFRTLFKESGDVITQLLRPLSPGSACTHPDLQEDLITTVLNLSIHDDNKKVFAEDPNLINLLIDALKWGTIQTKSNAAAAIFTLSALDSNKHIIGKSGAIKYLIAVLDEGHQIAMKDAASAIFNLCLVHENKGRTVREGAVKVILNKIMNHILVDELLAILALLSSHPTAVEEMGYRGAVSFLLSTIRESTSERCKENCVAILYTICYSDRTKWKEIKEEEKTNGSLSKLAQCGTSRAKRKASSILERVNRSPSLTHTA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05301 458 SUPERFAMILY RING/U-box 70 151 - -
Trre13g05301 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 149 IPR013083 -
Trre13g05301 458 Gene3D - 170 453 IPR011989 -
Trre13g05301 458 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Trre13g05301 458 FunFam RING-type E3 ubiquitin transferase 160 453 - -
Trre13g05301 458 CDD RING-Ubox_PUB 77 129 IPR045210 -
Trre13g05301 458 SUPERFAMILY ARM repeat 180 448 IPR016024 -
Trre13g05301 458 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Trre13g05301 458 PANTHER U BOX DOMAIN-CONTAINING 10 447 - -
Trre13g05301 458 MobiDBLite consensus disorder prediction 431 458 - -
Trre13g05301 458 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
Trre13g05301 458 FunFam RING-type E3 ubiquitin transferase 75 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05301 Trre-Chr13 58143277 58145314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05301 138 458 U-box Gene Family AT3G07360 58.232 7.65e-123 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05301 - - gmx:100806619 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05301 13 58143277 58145314 Trre13g05301 13 58143277 58145314 ECH