Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05285 ATGTTGAAGCTCTCTCGCATGCTTCCTTCATCTTCCAGGAATCACTTATTGGAAATTCTTTCGTCTACGAAACTTGAAGTTAGGGATTTCTCCTCCACTGCTGCAAATAACTATTCTGCTAAAGGATATGCTTCAGATCGTATATTTGCTCCTTATTCTGTTTACAAGGGAAAAGCTGCATTCTCACTCAGTCCTTGTCTTCCAACTTTCACTAAGTTGGATTCTGGGGCTCTTGTGGTTGATCGTCGCGGTTCCATAATGATGAGTTTCATGCCTGCTATTGGTGAGCGCAGATATGACTCAGACAAGAAACAAAGATTTGCCCTATCAGCTACTGAAGTTGGTTCTTTGATAGCCATGGGCCCCCAAGATTCATGTGAATTCTTTCATGACCCTTCAATGAAATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATAGCAATGGCTATTTTGTCTCTCTGACTGTTGTTAACACCTTGTTAAATACGAAAGACAATTTCAGTGTTCCTGTTACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGATCGTCTAACTAGTCTGACTAATAAGCAGTCAAGTGAGAAAGTCAGCTTTCAACCGAAGATGAACTCACACATTTTAGACTTGGAATGGGAAAAGTGA 693 0.4098 MLKLSRMLPSSSRNHLLEILSSTKLEVRDFSSTAANNYSAKGYASDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGALVVDRRGSIMMSFMPAIGERRYDSDKKQRFALSATEVGSLIAMGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHSNGYFVSLTVVNTLLNTKDNFSVPVTTAEFAVMKTACSFALPHIMGWDRLTSLTNKQSSEKVSFQPKMNSHILDLEWEK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05285 230 Pfam Whirly transcription factor 54 186 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre13g05285 230 Gene3D Transcriptional Coactivator Pc4; Chain A 38 211 IPR009044 GO:0003677|GO:0006355
Trre13g05285 230 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 31 230 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre13g05285 230 SUPERFAMILY ssDNA-binding transcriptional regulator domain 45 228 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05285 Trre-Chr13 57921047 57923963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05285 31 230 Whirly Transcription Factor Family AT1G71260 63.235 1.25e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Trre13g05285 Whirly 1e-52 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05285 K26561 - gmx:100817863 342.043