Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05283 ATGGAACACAGTGACAACCAGTTAAGCTCTTACTTCCACCACCACAACCACAACCACAACCACCACCAACAACAACAACCACAAGGAAATTCCACCACCGTATCCACCACCACTACCACCACCGCAATTCCGACCAATGGACTTTTATCGAACACAGATGGGTCCCACATACTGTATCCTCATTCAGTGGCTTCTGCTGTATCGTCTCAGCTTGAACCAGCTAAGAGAAAGAGAGGAAGACCTAGAAAATATGGAACACCTGAACAAGCTCTAGCTGCTAAAAAAGCTTCTACGTCGTCGTTTTCACCTACTCCACCTTCTGACAACAACAATAGCAACAAGAACACCACTCACTCTTTCTCTCCCTCTCCTTCTTTCTCTTCCAAGAAATCTCATTCTCTCTCTCTAGGCAATGCAGGACAAGGTTTCAGTGCACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGCAATTTATGCAACAAAACAGGGGTGAGGTATGCATTCTATCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGTCAACCAGCATCTTCAGGAGGCAACATTACATATGAGGGTCGGTTTGATATTATTTCGCTTACCGGTTCCTATGTCCGTAATGAAACCGGAGTGCGAAGTGGTGGTCTCAGTGTATGCTTGTCTAATTCTGATGGACAAATCATAGGTGGTGGTGTTGGTGGGCCCCTTAAAGCTGCCGGTCCAGTTCAGGTCATTGTTGGTACATTTTTTATCGACAACAAGAAGGATACTAGTGCTGGTGGAAAAGGTGATGCCTCTACCGGTAAGTTGCCATCACCAGTTGGTGAATCAGCATCAAATTTAGGTTACCGCCAAACAGTTGACAGTTCCAGTGGGAATCCAATGCGGGGAAATGAAGAACATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTACATGTGACACCTCCCAGGTCCACAGACTGGGGGAGTCATCCTGATTCAAGACATGCTAGTTATGACCTTTCAGGAAGAACAGGCCATGGGTCACACCAGTCTCCTGAGAATGGAGGCTATGACCAAATTCCTGATTGA 1104 0.4611 MEHSDNQLSSYFHHHNHNHNHHQQQQPQGNSTTVSTTTTTTAIPTNGLLSNTDGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTSSFSPTPPSDNNNSNKNTTHSFSPSPSFSSKKSHSLSLGNAGQGFSAHVIAVAAGEDVGQKIMQFMQQNRGEVCILSASGSISNASLRQPASSGGNITYEGRFDIISLTGSYVRNETGVRSGGLSVCLSNSDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDTSAGGKGDASTGKLPSPVGESASNLGYRQTVDSSSGNPMRGNEEHQAMGGSHFMIQQLGLHVTPPRSTDWGSHPDSRHASYDLSGRTGHGSHQSPENGGYDQIPD 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05283 367 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 255 - -
Trre13g05283 367 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 255 IPR005175 -
Trre13g05283 367 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 18 301 IPR039605 GO:0003680
Trre13g05283 367 MobiDBLite consensus disorder prediction 22 48 - -
Trre13g05283 367 MobiDBLite consensus disorder prediction 92 134 - -
Trre13g05283 367 CDD DUF296 146 255 IPR005175 -
Trre13g05283 367 MobiDBLite consensus disorder prediction 66 134 - -
Trre13g05283 367 MobiDBLite consensus disorder prediction 324 367 - -
Trre13g05283 367 MobiDBLite consensus disorder prediction 278 303 - -
Trre13g05283 367 ProSiteProfiles PPC domain profile profile. 139 281 IPR005175 -
Trre13g05283 367 MobiDBLite consensus disorder prediction 1 48 - -
Trre13g05283 367 MobiDBLite consensus disorder prediction 262 307 - -
Trre13g05283 367 Gene3D - 144 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05283 Trre-Chr13 57909424 57912782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05283 32 367 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 50.407 1.70e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05283 - - gmx:100809675 485.723