Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05282 ATGGAAAAAGGGTTTTCTTCTTCTTTGTTGTTATTGCTATTATTGATTACTTCTCTTGTAATATCTGTTTATGGTGAATATGCACATTGCAACTGTGATGATGATGATGATAATGGGATTTGGAGTATACCAAGTATTTTAGTTTGTCAAAAAGTCAGTGATTTTTTCATTGCTATTGCATATTTTTCCATACCCCTTGAGCTTATTTACTTTGTTAGCTACTCCAATGTTCCATTTAAATTGGTGTTCCTTCAATTTGTTGCCTTCATTGTTCTATGTGGTTTGACCCATTTACTCAATGCCTATACTTACTATGGCCCTCATTCCTTTCATTTGTTTCTATCTCTCACTGTTGCTAAATTCTTCACTGCCCTTGTTTCATGTGCCACTGCAATTACTTTTCCCACCTTGATTCCTCTTCTTTTGAAAATCAAGGTGAGGGAGTTGTTTTTGAGGCAGAATGTGTTGGAATTGGGGCAAGAGGTTGGGATTATGAAGAAACAAAAGGAGGCTAGTTGGCATGTTAGGATGTTGACGCGTGAGATTAGGAAGTCGTTAGATAAGCATACCATTTTGTATACTACCCTTGTTGAGCTTTCCAAGGCGTTGGAGTTGCATAATTGTGCGGTTTGGATGCCGGATGAGGAAAGAAGGGTGATGCATTTGACTCATGAGTTGAAACCAAATCCGGCAAAGAGTTTTCATAGTTCTATTTCTGTAAGTGATTTGGATGTGTTAGAGATAAGAAAGAGCAAGGGGGTGTCAATTTTGAGGCCTGATTCTGCACTTGGAGCTGCGAGTAGTGGTGGATCTGAGGACTCGGGTGCTGTAGCAGCCATTCGTATGCCGATACTTCATGTTTCGAATTTTAAGGGAGGGACACCGGAGTTTGTTGAGACATCTTATGCTATACTTGTTTTGGTTCTTCCAAAATCAAACTCAAGGGCTTGGACCTACCATGAGATGGAGATAGTGGAAGTAGTTGCTGACCAGGTTGCTGTGGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTAATGAGACAGAAACTCGCTGAGCAAAACCGGGCGTTGCAACAGGCACAAAAGTATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTGAGAAAGTGATGAGCCACGGAATGAGGAGACCTATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAATGTAAGACCCGAACAGAAGATTGTTGTTGACACAATGCTGAAAGTTAGCAACTCGCTCTCGCGTTTGATAAATGATGTTATGGAGATTTCGGCCAACGATAAAGGAACTTTCCAGTTAGAGTTGAAACATTTCCATCTACATTCCATGATGAGGGAAGCTTCTTGTATTGCCAAGTGTTTGTGTGTATATAAAGGCTTTGGTCTTGAAATTGATGTGCAGAGATCTTTGCCTGATATGGTAATAGGTGATGAGGCAAGTGATTCTGGTAAGGATGATAGAAGTTCTGGAATATGGAGATCAAGCATACAAAATAATGATGTGTATATAAAATTTAATTTCCAGATAGCTGGTACTAGTTCCCATTCAGATGAATTGATTTTGACTAGAAGTAGTGCTAGTAGGATGCACCACAACAATGAACCTAAGGAGGGCTTGAGCTTCAGCATTTGCAAAACGCTTGTGCAGATGATGCAAGGTAATATTTGGATATCACCAAACTCTCTGGGTTTGGCACAAGGAATGACACTTCTTCTCAAGTTTCAATCAGGATCTTCGCGTGGAAGATTTGTTCTAGCTCATAAAGAATTTTCAAACCAACAGTTTAAAGGGCTTAATGTTATTTTAGCCGATGATGATAATGTAAACATGACTGTAACAAAGAAGCTGCTTGAGAAGCTAGGTTGTCAAGTAACCGCTGTTTCTTCGGGTTTTGATTGTTTGACTGCTATAACTGCCTCCAGTGTATCATTTAAAGTCATCCTATTGGATCTTCAGATGCCTGAAATGGATGGTTTTGAAGTTGCAAGGAAGATTCGGAAGTTCCAAAGCCGAAATTGGCCCTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACACATAAAGGAAAGATGCCTTCAGGTGGGAATGAATGGATTGATTCGGAAACCTATCCTCCTTCACGAGTTAGCTGATGAAATTAGAACAGTACTGCTACGTGCAGGTGAAAAATTCTAA 2199 0.4029 MEKGFSSSLLLLLLLITSLVISVYGEYAHCNCDDDDDNGIWSIPSILVCQKVSDFFIAIAYFSIPLELIYFVSYSNVPFKLVFLQFVAFIVLCGLTHLLNAYTYYGPHSFHLFLSLTVAKFFTALVSCATAITFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALELHNCAVWMPDEERRVMHLTHELKPNPAKSFHSSISVSDLDVLEIRKSKGVSILRPDSALGAASSGGSEDSGAVAAIRMPILHVSNFKGGTPEFVETSYAILVLVLPKSNSRAWTYHEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQAQKYAMMASQARSSFEKVMSHGMRRPMHSILGLLSMFQEDNVRPEQKIVVDTMLKVSNSLSRLINDVMEISANDKGTFQLELKHFHLHSMMREASCIAKCLCVYKGFGLEIDVQRSLPDMVIGDEASDSGKDDRSSGIWRSSIQNNDVYIKFNFQIAGTSSHSDELILTRSSASRMHHNNEPKEGLSFSICKTLVQMMQGNIWISPNSLGLAQGMTLLLKFQSGSSRGRFVLAHKEFSNQQFKGLNVILADDDNVNMTVTKKLLEKLGCQVTAVSSGFDCLTAITASSVSFKVILLDLQMPEMDGFEVARKIRKFQSRNWPLIIALTASAEEHIKERCLQVGMNGLIRKPILLHELADEIRTVLLRAGEKF 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05282 732 Gene3D - 171 336 IPR029016 -
Trre13g05282 732 SMART REC_2 606 721 IPR001789 GO:0000160
Trre13g05282 732 Pfam GAF domain 189 336 IPR003018 GO:0005515
Trre13g05282 732 SUPERFAMILY GAF domain-like 190 339 - -
Trre13g05282 732 CDD HATPase_ETR2_ERS2-EIN4-like 486 580 - -
Trre13g05282 732 CDD REC_ETR-like 606 721 - -
Trre13g05282 732 ProSiteProfiles Response regulatory domain profile. 607 725 IPR001789 GO:0000160
Trre13g05282 732 SMART gaf_1 187 346 IPR003018 GO:0005515
Trre13g05282 732 Gene3D - 337 435 - -
Trre13g05282 732 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Trre13g05282 732 Pfam Response regulator receiver domain 608 721 IPR001789 GO:0000160
Trre13g05282 732 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Trre13g05282 732 SUPERFAMILY CheY-like 602 725 IPR011006 -
Trre13g05282 732 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 26 486 - -
Trre13g05282 732 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Trre13g05282 732 FunFam Ethylene receptor 604 728 - -
Trre13g05282 732 Coils Coil 342 362 - -
Trre13g05282 732 PIRSF Ethylen_sen_hybr_HK 487 731 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Trre13g05282 732 PIRSF Ethylen_sen_hybr_HK 3 489 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Trre13g05282 732 FunFam Ethylene receptor 4 339 433 - -
Trre13g05282 732 Gene3D - 606 731 - -
Trre13g05282 732 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 357 437 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05282 Trre-Chr13 57903799 57906350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05282 21 730 Miscellaneous Gene Families AT3G04580 59.363 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre13g05282 GAF 2e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05282 K14509 - gmx:100805023 1146.34