Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05281 ATGTCTATTTATGCCACAACCGCATCACTCTCATTTCATGCGCCTTCTTCATCCTCTTCCTCAACCTATAAGGATTTTGGTTGTTGTATTAAAGTTGTAGTCACAATGTCAAATCCCAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGCTGGGAGAGTAGTAATGGAGCTTTTTGCCGATGTTGCACCGAAAACTGCTGAAAACTTCAGGGTTCTCTGCACCGGTGAGAAGGGAATTGGACAATGTGGTAAACCTTTACACTACAAAGGTTCTGGTTTTCATCGTATTATTCCAGAATTTATGTGTCAAGGAGGAGATTTTACCAGAGGGAATGGGACTGGAGGAGAGTCTATTTACGGGGCTAAATTTGCCGATGAGAATTTTAAGTTGAAGCATACTGGACCTGGTATTCTTTCCATGGCAAATTCTGGACCTAATACAAATGGTTCCCAATTTTTTATATGTACCGCCAAGACATCATGGCTTGATGGGAAACATGTTGTATTTGGGAAAGTGGTTGATGGATACAGTGTAGTTCAGGAAATGGAGAAGGTGGGTTCACAAAGTGGTAGAACATTAGAACCAGTTGTAATTGAAGATTGTGGCCAAATAAAAGAGAATTAA 630 0.3952 MSIYATTASLSFHAPSSSSSSTYKDFGCCIKVVVTMSNPKVFFDILIGKMKAGRVVMELFADVAPKTAENFRVLCTGEKGIGQCGKPLHYKGSGFHRIIPEFMCQGGDFTRGNGTGGESIYGAKFADENFKLKHTGPGILSMANSGPNTNGSQFFICTAKTSWLDGKHVVFGKVVDGYSVVQEMEKVGSQSGRTLEPVVIEDCGQIKEN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05281 209 SUPERFAMILY Cyclophilin-like 32 206 IPR029000 -
Trre13g05281 209 PIRSF Peptidylpro_ismrse 29 209 IPR024936 GO:0003755
Trre13g05281 209 FunFam Peptidyl-prolyl cis-trans isomerase 35 207 - -
Trre13g05281 209 Gene3D - 31 209 IPR029000 -
Trre13g05281 209 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 42 205 IPR002130 GO:0000413|GO:0003755
Trre13g05281 209 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 153 IPR002130 GO:0000413|GO:0003755
Trre13g05281 209 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 153 165 IPR002130 GO:0000413|GO:0003755
Trre13g05281 209 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 59 74 IPR002130 GO:0000413|GO:0003755
Trre13g05281 209 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 166 181 IPR002130 GO:0000413|GO:0003755
Trre13g05281 209 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 95 107 IPR002130 GO:0000413|GO:0003755
Trre13g05281 209 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 49 204 IPR002130 GO:0000413|GO:0003755
Trre13g05281 209 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 90 107 IPR020892 GO:0003755|GO:0006457
Trre13g05281 209 CDD cyclophilin_ABH_like 39 204 - -
Trre13g05281 209 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 40 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05281 Trre-Chr13 57899563 57900814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05281 53 200 U-box Gene Family AT5G67530 49.333 2.66e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05281 K01802 - tcc:18600117 325.479