Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05275 ATGGAAAACAAAATCTATGAAGAAACCCTTAAGAAGAAACATTACCAAGTCGAGAAACAAATTGGAGAAGGAGAATTTGGAACAATTTTCCAATGCTATCACACCATTACAAACTGTTCCTACGCCATTAAAATAACAAAACGTAAATTTGTCAATAACGAAACCAAAATCATGAACTACCTCCCTCCACATCCAAACATCCTTAAAATCTTTGACTCATTTGAAGATGTAGATTTCTCATACATGGTACTCGAACTCTGCCAAACCAATGACCTTCTCGAAGTCATAAGTAAAGGCATATTATCGGAGCCACAAGCTGCATGTATCGTTAAGAAGCTTCTAGAAGCGATAGAGCATTGTCATAAAAACGGAGTGGCACATAGAGACATAAAACCGGAGAATGTTTTGTTTGATTTTGATGGAAATGTCAAACTCGCTGATTTTGGTTGTTCAGAATGTTTTTTTAAGGATGGAAGAAAGAAAAATATGACTGAACATGTGGGAACACCTTTTTACGTGCCACCTGAAGTGATCTTGAGAAAACATTGTTATAATGAGAAAGTTGATATTTGGAGTTGTGGTGTTACTTTTTATGCTATGTTGAGTGGGATAATACCCTTTGTTGGAGAAACTAATGATAAGATTTTTGAGAGTATCTTGAAGACAGATTATTTGAGGTTTCCAAAGGAACATTTCGAATCTGTGTCGTCGTCTGTTAAAGGTCTTATTAGGAGGATGGTTTGTTGGGATCCCTCGAGACGAATATCGGCTAAGCAAGCCTTGATGCATCCGTGGATCGTGAAAGGAGGTGTGATTAAAGATGATGATGATGTTATTGATGTGTTTGGTTCGACATTGACAAACCGCATCCGTCCGCCCAACAAGCTTTCCATCTTGAGAGCAAGAAGCTACAAAGGGTAG 921 0.3789 MENKIYEETLKKKHYQVEKQIGEGEFGTIFQCYHTITNCSYAIKITKRKFVNNETKIMNYLPPHPNILKIFDSFEDVDFSYMVLELCQTNDLLEVISKGILSEPQAACIVKKLLEAIEHCHKNGVAHRDIKPENVLFDFDGNVKLADFGCSECFFKDGRKKNMTEHVGTPFYVPPEVILRKHCYNEKVDIWSCGVTFYAMLSGIIPFVGETNDKIFESILKTDYLRFPKEHFESVSSSVKGLIRRMVCWDPSRRISAKQALMHPWIVKGGVIKDDDDVIDVFGSTLTNRIRPPNKLSILRARSYKG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05275 306 FunFam Maternal embryonic leucine zipper kinase 3 275 - -
Trre13g05275 306 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Trre13g05275 306 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 273 - -
Trre13g05275 306 ProSiteProfiles Protein kinase domain profile. 15 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05275 306 CDD STKc_CAMK 14 265 - -
Trre13g05275 306 Pfam Protein kinase domain 15 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05275 306 Gene3D Transferase(Phosphotransferase) domain 1 6 293 - -
Trre13g05275 306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trre13g05275 306 SMART serkin_6 15 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05275 306 SUPERFAMILY Protein kinase-like (PK-like) 9 268 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05275 Trre-Chr13 57868183 57869550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05275 6 267 EF-hand Containing Proteins AT4G09570 41.091 6.65e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre13g05275 Pkinase 1.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05275 - K08794 mtr:11423185 316.62