Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05273 ATGGCTACTTACCATGAAATTGGAATCATTTTCTTGCTCCAAATGATTACTACTTGTGTAAAGCCACTCTCATTCAATTATCAACAAGGCTTTAAATATGATGATGTGCAACTAAAAGGAGATGCTTCTTTGTTGTATTCATACATCCAACTCACTTCAATCTCAAGGTACCAAAGTAATGCTTACAGTGTCGGGCGAGTCACGTGTTTCGAGCCATTACAACTATGGGACAAGGCCACAAGAAAACTCACTGATTTCACTACTCAATTTTCCTTTGTAATTTACTCAAATGAAACTGATTTTGGAGATGGATTGTCATTTTTCATAGCAGATCCAAAACTTCCACTTTATTACCATATAAAACAAGGAGGTGGTCTTGGTCTTGTGGATGAATACCAAATAGTTAATTCTAAATATTCATTTCTAGCAGTGGAATTTGACACTCACCAAAATTCTTGGGATCCATCAGGCACTCATGTAGGTATAAATTTCAACTCTATGATATCAAATATAACTAAACCATGGTTCATTGATATTAGGAGTAAGAAGATATATTATTGTAAAATTGAATACAATTCAAGTACTCATAATTTGAATGTTTCTTTCACTGGAAACATAACAAAAACTGCTACAGGATATATGTTTGAGATGAATACATTAAAGTCATGGTCATTCAATTCAAGTTTAAAAATTCATGATGAGATTAATCCTAGTCCTTCGCCGATTCCCAATAGTCCTAAAATAGATAGCAAAAAAGGTAGTATGTGGGTTGGGCTAGGAGTTGGTGTAGCTATTGCATCGAGTTTCCTTATTTTAGGAGAGGTTTGTTTTGTAATTTGGAAAAGGACTAAAGGGAAAAATGAAGATTCAATTTTTGACCTGAAAATGGATGCTGAATTCCAAAGTGGCACCGGACCTAAAAAGTTTTGCTATAATAAATTGGCGAGTGCAACAAATAACTTCGCAGAAGAACAAAAGATCGGACAAGGTGGTTTTGGCGGTGTTTATAAAGGCTATTTGAAAGACATAGATACTAATGTTGCTATAAAACGGATATCAAGAGAGTCTAGACAAGGGATTAAGGAATATGCAACTGAAGTGAAGATCATTAGCCAACTTCGGCATAGGAATTTAGTACAACTAATTGGTTGGTGTCACAAGAAAAAAGATTTTCTCCTTATATATGAGTTCTTGCAAAATGGTAGCTTGGATTCTCATCTATATCGTGGAAAAAGCGTATTGACATGGCAAATGAGGTATAACATTGCGATGGACTTGGCTTCAGCATTGTTGTACCTTCATGAAGAATGGGAACAATGTGTGCTTCATAGGGATGTGAAATCCAGCAACGTTATGTTGGACGACAATTTCAATGCTAAGCTTGGTGATTTCGGGTTGGCTAGGCTCGTGGATTATGAGAAAGGATCACAATCACAAACGACGGTTATAGCTGGGACCATGGGGTACATAGCTCCTGAATATGTCACAACAGGGAAGGCTACAAAGGAATCAGATATATACAGTTTTGGTATTGTTTCATTGGAATTAGCCAGTGGAAGAAAACCAGTTGATCTTAATGCCAAGGAGGATCAAATGGCTATATTTGATTGGGTTTGGGAGCTTTATAGATTAGGAAGGTTGCTCGAAGTAGTTGACACAAAACTTGAGGGTGTATTTGATGAGGAACAAATGGAACGTGTCGTGGTTATTGGTCTTTGGTGTGCAAATCCAAATTATTCATTTAGGCCATCTGTAAGACAAGTTATTCAGGTGCTTAAACTCGAAGCTCCTTTACCAATTCTCCCACCTCCAACAAAGAGTCCAATTATCGGTCCAGTTTCTTCTGCCTCTCCGCAACTTACACTTCATAACCAGCTAGAATAA 1884 0.3694 MATYHEIGIIFLLQMITTCVKPLSFNYQQGFKYDDVQLKGDASLLYSYIQLTSISRYQSNAYSVGRVTCFEPLQLWDKATRKLTDFTTQFSFVIYSNETDFGDGLSFFIADPKLPLYYHIKQGGGLGLVDEYQIVNSKYSFLAVEFDTHQNSWDPSGTHVGINFNSMISNITKPWFIDIRSKKIYYCKIEYNSSTHNLNVSFTGNITKTATGYMFEMNTLKSWSFNSSLKIHDEINPSPSPIPNSPKIDSKKGSMWVGLGVGVAIASSFLILGEVCFVIWKRTKGKNEDSIFDLKMDAEFQSGTGPKKFCYNKLASATNNFAEEQKIGQGGFGGVYKGYLKDIDTNVAIKRISRESRQGIKEYATEVKIISQLRHRNLVQLIGWCHKKKDFLLIYEFLQNGSLDSHLYRGKSVLTWQMRYNIAMDLASALLYLHEEWEQCVLHRDVKSSNVMLDDNFNAKLGDFGLARLVDYEKGSQSQTTVIAGTMGYIAPEYVTTGKATKESDIYSFGIVSLELASGRKPVDLNAKEDQMAIFDWVWELYRLGRLLEVVDTKLEGVFDEEQMERVVVIGLWCANPNYSFRPSVRQVIQVLKLEAPLPILPPPTKSPIIGPVSSASPQLTLHNQLE 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05273 627 SMART serkin_6 321 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05273 627 Pfam Legume lectin domain 23 203 IPR001220 GO:0030246
Trre13g05273 627 PANTHER - 53 596 - -
Trre13g05273 627 Gene3D Phosphorylase Kinase; domain 1 306 397 - -
Trre13g05273 627 Gene3D Transferase(Phosphotransferase) domain 1 398 601 - -
Trre13g05273 627 ProSitePatterns Legume lectins beta-chain signature. 142 148 IPR019825 -
Trre13g05273 627 FunFam Lectin-domain containing receptor kinase A4.3 398 611 - -
Trre13g05273 627 SUPERFAMILY Protein kinase-like (PK-like) 305 612 IPR011009 -
Trre13g05273 627 FunFam L-type lectin-domain containing receptor kinase IX.1 306 397 - -
Trre13g05273 627 CDD lectin_legume_LecRK_Arcelin_ConA 23 229 IPR001220 GO:0030246
Trre13g05273 627 Pfam Protein kinase domain 322 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05273 627 CDD STKc_IRAK 327 593 - -
Trre13g05273 627 ProSiteProfiles Protein kinase domain profile. 321 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05273 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Trre13g05273 627 Gene3D - 21 238 - -
Trre13g05273 627 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 231 IPR013320 -
Trre13g05273 627 ProSitePatterns Protein kinases ATP-binding region signature. 327 350 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05273 Trre-Chr13 57855074 57857023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05273 9 609 Receptor kinase-like Gene Family AT5G10530 43.103 1.36e-164 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre13g05273 Pkinase 6.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05273 - - gmx:100814713 848.966