Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05272 ATGACTACTTGCTATGTTAGTCTCCATGCAGTGAAAATAATTTTCTTGCTACAAATGATTACTACTTTTGTAAAGCCACTCTCATTTGATTACCAAGGCTTTAAATATAATGATGTGAAGCCAGAAGGAGATGCTTCTTTGTTATATTCATACATCCAACTTACTTCAACCTCAAGGTACCAAACCAATACTTATAGTGTCGGTCGAGTCACGTGTTTCGAGCCATTACAACTATGGGACAAGACCTCAAGAAAACTTACTGATTTCACTACTAAATTTTCCTTTGTAGTTTACTCAAACAAAACTAATTTTGGAGATGGATTAGCATTTTTCTTTGCAGATCCAGAACTTCCACTTCCTGATCATATGCAAGAAGGTGGTGGTCTTGGTCTTGTGGATAAATATCAAATAATGAATTCTACTAAATATTCATTTTTAGCAGTGGAATTTGATACTTGCCACAATCCTTGGGATCCATCAGGTATGCATGTAGGTATAAATTTCAACTCTATGATGTCTATAAAAACTAAACCATGGATGATTGATATTAGCGATAAGACGGCTTATTATGATTGTAAAATTGTGTACAATTCAAGTGATCATAATTTAAAAATTTCTTACACTGGTAAAATAATCAATGCTGCTACCGGACTTGTGTTTGAGATGAATACATTAATGTCATGGTCATTCAATTCAAGTTTACAAATTCATGATGTGAAAGTGTCCTCCCAAATATCCACAAATCCTAGTCCTTCACCAATTCCAAATAGTCCTAAAATAGATAGCAAAAAAGGTACTATATGGGTAGGACTAGGAGTTGGTGTAGTGACTGCAACAAATAACTTTGAAGAAACACAAAAGATAGGACAAGGTGGTTTTGGCGGTGTTTATAAAGGCTATTTGAAAGACATAGATACCGATGTTGCTATAAAAAGGATATCAAGAGAGTCAAAACAAGGGATTAAGGAATATGCAACTGAAGTGAAGATCATTAGCCAACTTCGGCATAGGAATTTAGTACAACTAATTGGTTGGTGTCACATGAAAAAAGACTTTCTTCTTATATATGAGTTCATGCAAAATGGTAGCTTAGATTCTCATCTATACCGCGGCAAAAGCGTATTGACTTGGCATATGCGGTACAACATTGCTATGGACTTGGCTTCTGCATTGTTGTACCTTCATGAAGAATGGGAACAATGTGTGATTCATAGAGACATAAAATCCAGCAACATTATGTTAGACTATAATTTCAATGCTAAACTTGGTGATTTCGGGATGGCTAGGTTGGTGGATCATGAGAAAGAATCACAAAGTACAACAATAATAGCGGGGACTATGGGGTATATAGCTCCTGAATATTACACAACAGGAAAAGCTACAAAGGAATCTGATATATATAGTTTTGGTATTGTTTCATTGGAGTTAGCTAGTGGAAGAAAACCAATTGATCTTAATGCTAAAGAGGATCAAGTGACTATATTCGATTGGGTTCGAGAGCTTTATAGATTAGGTAAGTTCCTTGAAGTAGTAGACACAAAACTTGACGGTATATTTGACGAGGAACAAATGGAACGTTTAGTGGTTATTGGTCTTTGGTGTGCAAATCCAAATTATTCATTTAGGCCATCTGCAAGACAAGTGATTCAGGATTATTTTGATGTACATAAAGTTAATGGATAG 1683 0.3518 MTTCYVSLHAVKIIFLLQMITTFVKPLSFDYQGFKYNDVKPEGDASLLYSYIQLTSTSRYQTNTYSVGRVTCFEPLQLWDKTSRKLTDFTTKFSFVVYSNKTNFGDGLAFFFADPELPLPDHMQEGGGLGLVDKYQIMNSTKYSFLAVEFDTCHNPWDPSGMHVGINFNSMMSIKTKPWMIDISDKTAYYDCKIVYNSSDHNLKISYTGKIINAATGLVFEMNTLMSWSFNSSLQIHDVKVSSQISTNPSPSPIPNSPKIDSKKGTIWVGLGVGVVTATNNFEETQKIGQGGFGGVYKGYLKDIDTDVAIKRISRESKQGIKEYATEVKIISQLRHRNLVQLIGWCHMKKDFLLIYEFMQNGSLDSHLYRGKSVLTWHMRYNIAMDLASALLYLHEEWEQCVIHRDIKSSNIMLDYNFNAKLGDFGMARLVDHEKESQSTTIIAGTMGYIAPEYYTTGKATKESDIYSFGIVSLELASGRKPIDLNAKEDQVTIFDWVRELYRLGKFLEVVDTKLDGIFDEEQMERLVVIGLWCANPNYSFRPSARQVIQDYFDVHKVNG 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05272 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672|GO:0006468
Trre13g05272 560 FunFam L-type lectin-domain containing receptor kinase IX.1 273 358 - -
Trre13g05272 560 ProSitePatterns Protein kinases ATP-binding region signature. 288 311 IPR017441 GO:0005524
Trre13g05272 560 FunFam Lectin-domain containing receptor kinase A4.3 359 557 - -
Trre13g05272 560 CDD STKc_IRAK 288 550 - -
Trre13g05272 560 Pfam Protein kinase domain 282 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05272 560 ProSitePatterns Legume lectins beta-chain signature. 146 152 IPR019825 -
Trre13g05272 560 SUPERFAMILY Protein kinase-like (PK-like) 275 551 IPR011009 -
Trre13g05272 560 SMART serkin_6 282 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05272 560 Pfam Legume lectin domain 27 208 IPR001220 GO:0030246
Trre13g05272 560 ProSiteProfiles Protein kinase domain profile. 282 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05272 560 Gene3D - 25 248 - -
Trre13g05272 560 Gene3D Transferase(Phosphotransferase) domain 1 359 558 - -
Trre13g05272 560 Gene3D Phosphorylase Kinase; domain 1 274 358 - -
Trre13g05272 560 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 242 IPR013320 -
Trre13g05272 560 PANTHER - 55 550 - -
Trre13g05272 560 CDD lectin_legume_LecRK_Arcelin_ConA 27 234 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05272 Trre-Chr13 57852028 57854090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05272 13 550 Receptor kinase-like Gene Family AT5G10530 40.722 1.38e-137 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre13g05272 Pkinase 5.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05272 - - aprc:113852043 690.263