Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05258 ATGTTGGGAGCGGTCAGAATACGCCGCATGGTTGAAAGGCTACAATTATCTCAGAGGACAAGGGATGACGTATACAGTCTTTTCCAGCGAATCCTAAACGAGCGGACACACCTCTTCTTCAATCGTCATATTGACCAAATCATGCTGTGTTGCTTCTATAGGGTCGCACAGTCTTCAAAACTGAACCTGAGTATCTGGGAGATTCTACACAGCTACAAACAGCAACCAGAGTGCAGATCATCCGTTTTTCGTAGTGTATTTGTTGATTGCCCATTGGCAGGCAATAATGATGACGAGCAACAGAAGCATGTTGGAATTATTACATTTTACAATGACATATTCACTCGATCTGTATGGCCACTGGTGATGGAACTTGTCACCGATGAAGAAACTGTGAAAAGTGACCAATTAGCTGAAGTTGTTAATTCAAAGGATGGCCATCTAGCTCAATGTCTTGTGTCTCCAAAAATAGTACCTTTCCCAAGATTTCCTGTTATGCATCGGGAAAAACGATACCCCACAAAAAATTTACGCGTCTCTCCATTATCATCATCCGAGATCATTATGTTGGGAGCAGTCAGAATAGATGGCATGGTTGAAAAGCTACAACTATCTCAGCAGACAAGAGAGGATGACCTAAATTTTGCAGGGATTATAGCCAGCTATAGACTGCAACCACAGTACACACCACCAGTTTTTCATAGTGAATTTTGTGATTGGCCATTGGCATGCCTAGACCCGTCATATGGGAAAACAAAGGGACAGGCACATATCACTAACATTGCAAAATATTACAATGATATATTCCTTCCCTATGTAAAGCCGCTGCTGTCGGAAGTGACACCTTTGTGGATTCACACAATAACTGAATTCATTAACAAAGCCGATGGCCATCTAGCTCAATGTCCCGAGCCTCCTAAAATGTTTTCTTTCCCAAGCCTTCCTGTGGAAGAAAAGTCTGCCGCACACTATGCATGTGTCTCTCCAATAGGATCATCTGAGGTACTAAGTTTCTAG 1017 0.4248 MLGAVRIRRMVERLQLSQRTRDDVYSLFQRILNERTHLFFNRHIDQIMLCCFYRVAQSSKLNLSIWEILHSYKQQPECRSSVFRSVFVDCPLAGNNDDEQQKHVGIITFYNDIFTRSVWPLVMELVTDEETVKSDQLAEVVNSKDGHLAQCLVSPKIVPFPRFPVMHREKRYPTKNLRVSPLSSSEIIMLGAVRIDGMVEKLQLSQQTREDDLNFAGIIASYRLQPQYTPPVFHSEFCDWPLACLDPSYGKTKGQAHITNIAKYYNDIFLPYVKPLLSEVTPLWIHTITEFINKADGHLAQCPEPPKMFSFPSLPVEEKSAAHYACVSPIGSSEVLSF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05258 338 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 211 334 IPR028309 GO:0006357|GO:0051726
Trre13g05258 338 Gene3D - 1 144 - -
Trre13g05258 338 Gene3D - 207 287 - -
Trre13g05258 338 Pfam Retinoblastoma-associated protein B domain 2 118 IPR002719 GO:0005634|GO:0051726
Trre13g05258 338 SUPERFAMILY Cyclin-like 185 313 IPR036915 -
Trre13g05258 338 SUPERFAMILY Cyclin-like 2 129 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05258 Trre-Chr13 57771930 57773635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05258 185 335 Core Cell Cycle Gene Families AT3G12280 36.458 1.52e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Trre13g05258 RB_B 3e-30 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05258 K04681 - gmx:100777429 212.616