Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g05242 | ATGAAATATGGTAAAAATCAATGGGCTCGTATATCATCGCTTCTTGTTCGTAAATCTGCCAAACAGTGTAAAGCTCGTTGGTATGAGTGGTTAGATCCTTCCATTAAGAAAACCGAATGGACTAGAGAAGAGGATGAGAAGTTACTTCATCTTGCTAAGCTTATGCCTACTCAGTGGAGAACAATTGCTCCCATTGTTGGTCGTACTCCTTCGCAGTGTCTTGAACGGTATGAGAAACTCCTTGATGCTGCTTGTGTTAAGGATGATAATTATGAGCCTGGTGATGACCCTAGGAAATTGCGTCCGGGGGAGATTGACCCGAATCCTGAGTCTAAGCCTGCGCGACCTGATCCGGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCTGAAGCACGTGCTCGGTTGGCTAACACGAAAGGTAAGAAAGCGAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCTAGGAGGCTTGCTTCTTTACAGAAAAAGAGAGAACTGAAGGCTGCTGGAATTGATGCAAGGCAGCGGAGGAGGAAAAGAAGAGGGATTGACTATAATGCTGAGATTCCCTTTGAGAAGAGGCCTCCTCCGGGTTATTTTGATGTTGCTGATGAGGATAGGGTGGTGGAGCAGCCAGCATTCCCCACTACTATTGAAGAACTTGAGGGAAAAAGAAGGATTGATGTTGAGGCGCAGCTGAGAAAGCAAGACGTTGCAAGGAATAAAATTGCTGAGAGGCAAGATGCCCCTGCTGCTATTCTACATGCCAACAAGTTGAATGACCCAGAAACAGTTAGAAAGAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGACCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCCAGTGACCTTGTGGGCAGCGAGGAACTCGCCGAAGGCAGCAGTGCTACACGTGCTCTTCTCTCTAATTATCCACAGACACCCAACCAAGCAATGACTCCTTTAAGAACTCCTCAGAGAACACCAGCTAGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGCTGAGGGAGTCTCAGACACCACTGTTGGGAGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCACACTCCAAACCCTCTGCTGACTCCCTCTGCAACCCCTGGAAGTGCAGGCCTTACTCCCAGAAGTGGTATGACACCGGCAAGGGATGGTTTTTCTTTTGGCATGACTCCTAAAGGAACTCCTCTTAGGGATGAGCTACATATCAATGAAGATATGGAGATGCATGACAGTGCTAAACTCGAGCTACGGAGACAAGCTGGTATGAAAAAAAGTTTGCGCTCTGGTTTAAGCAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCAGTTCAAGAAGATGCTGAAGAGCTTGAGGAAAAGATTGAGGAGGATATGTCAGATAGAATGGCTAGAGAAAAGGCTGAAGAAGAGGCACGGCAGCAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAAAGGGAACTTCCTAGGCCTCCTCCAGCATCTATCGAGCTTATTAGGAACTCGTTGATAAGAGCTGACGGGGACAAGAGTTCATTTGTTCCACCAACTAATATTGAGCAAGCTGATGAGATGATAAAAAGGGAGCTTCTAACCTTACTGGAGCATGACAATGCCAAATATCCACTTGAGGAGATAGCTAATAAGGAGAGGAAGAAAGGATCCAAACGAGCAGCAAATGGGCCTGCTGTCCCTGTCATAGAAGATTTTCAGGAGGACGAGATGAAAGAGGCTGATAAGTTGATAAAAGATGAAGCCGAGTATCTTCGTGTAGCAATGGGGCATGAAAATGATTCCCTTGATGAATTTGTTGAAGCGCATACCACTTGCGTTAATGATTTAATGTTCTTTGTCACCCGTAATGAATATGCTCTATCAAGTGTTGCCGGAAACATGGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAATTAAGCTGGATGCTGGTAAGGAGAAATTGATACGACTTGAGAAGAAGGTTACAGTACTCACGCAAGGGTATGAGATGAGATCAAAAATGGGTCTTTGGCCGCAGATTGAGGCCACTTTCAAGCAGATGGATGTGGCTGCAACAGAATTCGAGTGTTTTCAAGCTTTGAAAAAGCAGGAGCAGTTAGCAGCAAAGCATAGGATAAACAACCTTTGGTCTGAAGTTCAGAAGCAAAAGGAACTTGAGAGAACATTACAGAAGAGATACGGAGATCTTATGGTAGAGCTGGAAAGGACACAAAATACAATGGAGCAGTTCAGGGTAGAAGCACAACAGAAGGAAGAAATTGAAGCCAAAAACCATGCAATAGAAGAGGGTACAGAAAATTATGCACCTGCTGCAGAGGATGAAAATTCAAAAGCTGTAGAAGGCAAAAACATTAGAAGCGTTATTGAAAATAGTGAGACCGCGGTAGATACAAGTGCTGCAGTGGAAATAAAAAATAATGAGGAAAATGGTGAGGGTCAAGATAATGCCAATCCAGATGCGGTTATTGAAGCTGCAAACAAATCTGATAACATAAAAGAAGCTACTCTGCTTGATGACATGCAAGTTGCTGACGGTAAAGGAGATGAGGCAAATTAG | 2679 | 0.4431 | MKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDARQRRRKRRGIDYNAEIPFEKRPPPGYFDVADEDRVVEQPAFPTTIEELEGKRRIDVEAQLRKQDVARNKIAERQDAPAAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLVGSEELAEGSSATRALLSNYPQTPNQAMTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIHTPNPLLTPSATPGSAGLTPRSGMTPARDGFSFGMTPKGTPLRDELHINEDMEMHDSAKLELRRQAGMKKSLRSGLSSLPQPKNEYQIVMQPVQEDAEELEEKIEEDMSDRMAREKAEEEARQQALLRKRSKVLQRELPRPPPASIELIRNSLIRADGDKSSFVPPTNIEQADEMIKRELLTLLEHDNAKYPLEEIANKERKKGSKRAANGPAVPVIEDFQEDEMKEADKLIKDEAEYLRVAMGHENDSLDEFVEAHTTCVNDLMFFVTRNEYALSSVAGNMEKLAALQNEFENVRIKLDAGKEKLIRLEKKVTVLTQGYEMRSKMGLWPQIEATFKQMDVAATEFECFQALKKQEQLAAKHRINNLWSEVQKQKELERTLQKRYGDLMVELERTQNTMEQFRVEAQQKEEIEAKNHAIEEGTENYAPAAEDENSKAVEGKNIRSVIENSETAVDTSAAVEIKNNEENGEGQDNANPDAVIEAANKSDNIKEATLLDDMQVADGKGDEAN | 892 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g05242 | 892 | MobiDBLite | consensus disorder prediction | 316 | 333 | - | - | |
Trre13g05242 | 892 | MobiDBLite | consensus disorder prediction | 387 | 401 | - | - | |
Trre13g05242 | 892 | Coils | Coil | 145 | 165 | - | - | |
Trre13g05242 | 892 | FunFam | CDC5 cell division cycle 5-like | 37 | 98 | - | - | |
Trre13g05242 | 892 | Coils | Coil | 667 | 694 | - | - | |
Trre13g05242 | 892 | CDD | SANT | 2 | 31 | IPR001005 | - | |
Trre13g05242 | 892 | MobiDBLite | consensus disorder prediction | 873 | 892 | - | - | |
Trre13g05242 | 892 | Coils | Coil | 465 | 492 | - | - | |
Trre13g05242 | 892 | ProSiteProfiles | Myb-like domain profile. | 1 | 31 | IPR001005 | - | |
Trre13g05242 | 892 | SUPERFAMILY | Homeodomain-like | 11 | 84 | IPR009057 | - | |
Trre13g05242 | 892 | SMART | sant | 1 | 33 | IPR001005 | - | |
Trre13g05242 | 892 | SMART | sant | 36 | 83 | IPR001005 | - | |
Trre13g05242 | 892 | MobiDBLite | consensus disorder prediction | 358 | 402 | - | - | |
Trre13g05242 | 892 | MobiDBLite | consensus disorder prediction | 88 | 127 | - | - | |
Trre13g05242 | 892 | Gene3D | - | 35 | 91 | - | - | |
Trre13g05242 | 892 | Pfam | pre-mRNA splicing factor component | 384 | 633 | IPR021786 | - | |
Trre13g05242 | 892 | CDD | SANT_CDC5_II | 33 | 84 | IPR047240 | - | |
Trre13g05242 | 892 | Gene3D | - | 1 | 34 | - | - | |
Trre13g05242 | 892 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 31 | IPR017930 | - | |
Trre13g05242 | 892 | MobiDBLite | consensus disorder prediction | 316 | 336 | - | - | |
Trre13g05242 | 892 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 32 | 85 | IPR017930 | - | |
Trre13g05242 | 892 | Coils | Coil | 774 | 794 | - | - | |
Trre13g05242 | 892 | PANTHER | CELL DIVISION CYCLE 5-LIKE PROTEIN | 1 | 781 | IPR047242 | GO:0000398|GO:0000974 | |
Trre13g05242 | 892 | ProSiteProfiles | Myb-like domain profile. | 32 | 81 | IPR001005 | - | |
Trre13g05242 | 892 | Pfam | Myb-like DNA-binding domain | 40 | 91 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g05242 | Trre-Chr13 | 57701786 | 57707431 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g05242 | 1 | 804 | MYB-Related Transcription Factor Family | AT1G09770 | 74.102 | 0.0 | 1175 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Trre13g05242 | Myb_Cef | 1.9e-62 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g05242 | K12860 | - | gmx:100790369 | 1371.68 |