Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05242 ATGAAATATGGTAAAAATCAATGGGCTCGTATATCATCGCTTCTTGTTCGTAAATCTGCCAAACAGTGTAAAGCTCGTTGGTATGAGTGGTTAGATCCTTCCATTAAGAAAACCGAATGGACTAGAGAAGAGGATGAGAAGTTACTTCATCTTGCTAAGCTTATGCCTACTCAGTGGAGAACAATTGCTCCCATTGTTGGTCGTACTCCTTCGCAGTGTCTTGAACGGTATGAGAAACTCCTTGATGCTGCTTGTGTTAAGGATGATAATTATGAGCCTGGTGATGACCCTAGGAAATTGCGTCCGGGGGAGATTGACCCGAATCCTGAGTCTAAGCCTGCGCGACCTGATCCGGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCTGAAGCACGTGCTCGGTTGGCTAACACGAAAGGTAAGAAAGCGAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCTAGGAGGCTTGCTTCTTTACAGAAAAAGAGAGAACTGAAGGCTGCTGGAATTGATGCAAGGCAGCGGAGGAGGAAAAGAAGAGGGATTGACTATAATGCTGAGATTCCCTTTGAGAAGAGGCCTCCTCCGGGTTATTTTGATGTTGCTGATGAGGATAGGGTGGTGGAGCAGCCAGCATTCCCCACTACTATTGAAGAACTTGAGGGAAAAAGAAGGATTGATGTTGAGGCGCAGCTGAGAAAGCAAGACGTTGCAAGGAATAAAATTGCTGAGAGGCAAGATGCCCCTGCTGCTATTCTACATGCCAACAAGTTGAATGACCCAGAAACAGTTAGAAAGAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGACCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCCAGTGACCTTGTGGGCAGCGAGGAACTCGCCGAAGGCAGCAGTGCTACACGTGCTCTTCTCTCTAATTATCCACAGACACCCAACCAAGCAATGACTCCTTTAAGAACTCCTCAGAGAACACCAGCTAGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGCTGAGGGAGTCTCAGACACCACTGTTGGGAGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCACACTCCAAACCCTCTGCTGACTCCCTCTGCAACCCCTGGAAGTGCAGGCCTTACTCCCAGAAGTGGTATGACACCGGCAAGGGATGGTTTTTCTTTTGGCATGACTCCTAAAGGAACTCCTCTTAGGGATGAGCTACATATCAATGAAGATATGGAGATGCATGACAGTGCTAAACTCGAGCTACGGAGACAAGCTGGTATGAAAAAAAGTTTGCGCTCTGGTTTAAGCAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCAGTTCAAGAAGATGCTGAAGAGCTTGAGGAAAAGATTGAGGAGGATATGTCAGATAGAATGGCTAGAGAAAAGGCTGAAGAAGAGGCACGGCAGCAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAAAGGGAACTTCCTAGGCCTCCTCCAGCATCTATCGAGCTTATTAGGAACTCGTTGATAAGAGCTGACGGGGACAAGAGTTCATTTGTTCCACCAACTAATATTGAGCAAGCTGATGAGATGATAAAAAGGGAGCTTCTAACCTTACTGGAGCATGACAATGCCAAATATCCACTTGAGGAGATAGCTAATAAGGAGAGGAAGAAAGGATCCAAACGAGCAGCAAATGGGCCTGCTGTCCCTGTCATAGAAGATTTTCAGGAGGACGAGATGAAAGAGGCTGATAAGTTGATAAAAGATGAAGCCGAGTATCTTCGTGTAGCAATGGGGCATGAAAATGATTCCCTTGATGAATTTGTTGAAGCGCATACCACTTGCGTTAATGATTTAATGTTCTTTGTCACCCGTAATGAATATGCTCTATCAAGTGTTGCCGGAAACATGGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAATTAAGCTGGATGCTGGTAAGGAGAAATTGATACGACTTGAGAAGAAGGTTACAGTACTCACGCAAGGGTATGAGATGAGATCAAAAATGGGTCTTTGGCCGCAGATTGAGGCCACTTTCAAGCAGATGGATGTGGCTGCAACAGAATTCGAGTGTTTTCAAGCTTTGAAAAAGCAGGAGCAGTTAGCAGCAAAGCATAGGATAAACAACCTTTGGTCTGAAGTTCAGAAGCAAAAGGAACTTGAGAGAACATTACAGAAGAGATACGGAGATCTTATGGTAGAGCTGGAAAGGACACAAAATACAATGGAGCAGTTCAGGGTAGAAGCACAACAGAAGGAAGAAATTGAAGCCAAAAACCATGCAATAGAAGAGGGTACAGAAAATTATGCACCTGCTGCAGAGGATGAAAATTCAAAAGCTGTAGAAGGCAAAAACATTAGAAGCGTTATTGAAAATAGTGAGACCGCGGTAGATACAAGTGCTGCAGTGGAAATAAAAAATAATGAGGAAAATGGTGAGGGTCAAGATAATGCCAATCCAGATGCGGTTATTGAAGCTGCAAACAAATCTGATAACATAAAAGAAGCTACTCTGCTTGATGACATGCAAGTTGCTGACGGTAAAGGAGATGAGGCAAATTAG 2679 0.4431 MKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDARQRRRKRRGIDYNAEIPFEKRPPPGYFDVADEDRVVEQPAFPTTIEELEGKRRIDVEAQLRKQDVARNKIAERQDAPAAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLVGSEELAEGSSATRALLSNYPQTPNQAMTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIHTPNPLLTPSATPGSAGLTPRSGMTPARDGFSFGMTPKGTPLRDELHINEDMEMHDSAKLELRRQAGMKKSLRSGLSSLPQPKNEYQIVMQPVQEDAEELEEKIEEDMSDRMAREKAEEEARQQALLRKRSKVLQRELPRPPPASIELIRNSLIRADGDKSSFVPPTNIEQADEMIKRELLTLLEHDNAKYPLEEIANKERKKGSKRAANGPAVPVIEDFQEDEMKEADKLIKDEAEYLRVAMGHENDSLDEFVEAHTTCVNDLMFFVTRNEYALSSVAGNMEKLAALQNEFENVRIKLDAGKEKLIRLEKKVTVLTQGYEMRSKMGLWPQIEATFKQMDVAATEFECFQALKKQEQLAAKHRINNLWSEVQKQKELERTLQKRYGDLMVELERTQNTMEQFRVEAQQKEEIEAKNHAIEEGTENYAPAAEDENSKAVEGKNIRSVIENSETAVDTSAAVEIKNNEENGEGQDNANPDAVIEAANKSDNIKEATLLDDMQVADGKGDEAN 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05242 892 MobiDBLite consensus disorder prediction 316 333 - -
Trre13g05242 892 MobiDBLite consensus disorder prediction 387 401 - -
Trre13g05242 892 Coils Coil 145 165 - -
Trre13g05242 892 FunFam CDC5 cell division cycle 5-like 37 98 - -
Trre13g05242 892 Coils Coil 667 694 - -
Trre13g05242 892 CDD SANT 2 31 IPR001005 -
Trre13g05242 892 MobiDBLite consensus disorder prediction 873 892 - -
Trre13g05242 892 Coils Coil 465 492 - -
Trre13g05242 892 ProSiteProfiles Myb-like domain profile. 1 31 IPR001005 -
Trre13g05242 892 SUPERFAMILY Homeodomain-like 11 84 IPR009057 -
Trre13g05242 892 SMART sant 1 33 IPR001005 -
Trre13g05242 892 SMART sant 36 83 IPR001005 -
Trre13g05242 892 MobiDBLite consensus disorder prediction 358 402 - -
Trre13g05242 892 MobiDBLite consensus disorder prediction 88 127 - -
Trre13g05242 892 Gene3D - 35 91 - -
Trre13g05242 892 Pfam pre-mRNA splicing factor component 384 633 IPR021786 -
Trre13g05242 892 CDD SANT_CDC5_II 33 84 IPR047240 -
Trre13g05242 892 Gene3D - 1 34 - -
Trre13g05242 892 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 31 IPR017930 -
Trre13g05242 892 MobiDBLite consensus disorder prediction 316 336 - -
Trre13g05242 892 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 85 IPR017930 -
Trre13g05242 892 Coils Coil 774 794 - -
Trre13g05242 892 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 781 IPR047242 GO:0000398|GO:0000974
Trre13g05242 892 ProSiteProfiles Myb-like domain profile. 32 81 IPR001005 -
Trre13g05242 892 Pfam Myb-like DNA-binding domain 40 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05242 Trre-Chr13 57701786 57707431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05242 1 804 MYB-Related Transcription Factor Family AT1G09770 74.102 0.0 1175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g05242 Myb_Cef 1.9e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05242 K12860 - gmx:100790369 1371.68