Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05241 ATGCATTCTTCATCTTCACCTGTTCTTCCCACTATTATGGAAAGCAAATGTATGAAACCCCCGGGTTCTTTTCATTGTTCATCTGTCGGGGGTCTGAATACAAATCCTACCTCACTGCAAGCTGCATCACTGAATCCGATCAGAAGTGTTCGTCCGGTGTTTTCAACCACTGCTGAATGTCCTGGCGGCATTCCTTTTTCTCCTATTTCACAGCATGATAAGCAATATCAAGATCCCCCCTTCGCTTCTCAGACATTAGGTGACAATGTCTCTTTGGAAACACACTCAACAACATTCGCTTCTCACCCTCAACAAAATGATGATATTTCTTGGGGACCAGATCCAATGCAGGATATTCTTAGTTTTCCTGATATTTTTTCTGTTCAGCATGATCAGGTGGAAAACGGTGCTTGTTACATGAATGATGACAATGTCAAAAAATCTGATTTCGGGGAATGGGTTGAACAGCTAATGACAATTGATGATACTCTCCACCCAAATTGGAATCAGCTTCTTGGTGATGACAATGCTGCAGAACCAACACCGAAGGCAATGCAGGTTTCTCAGAAGCCGCATACACCATCTGCAGAAGTTAACATTCTTTGCAATTCAGCATCAACTGCATCTCAAACAAAGCCTAGAATGCGTTGGAGTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTTAACAAGCTTGGTGGCAGTGACAAGGCTACTCCAAAAGGTGTCTTGAATCTGATGAATGTTGAAGGCCTTACCATCTACCATGTAAAAAGCCACCTGCAGAAGTATAGAACTGCCAGATACAAACCTGAGTCACCAGAAGAAACTTCTGAGAAAAAGACGAGTTCAATTGAAGAAATGAAATCTCTAGACTTGAAAACGAGCAAGGGGATCACCGAAGCATTACGGTTGCAGATGGAACTCCAGAAGCGGCTCCACGAACAACTTGAGATTCAAAGGAAGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTTGAGATGATGTTTGAGAAACAGAAACTGATCGGTGACAACAAGGGCTCTAGCACTTCAAACGCGCCTTCTGCTGCACTGTTGGATACGGCGCTACCTTCTCCTGTAGACAATTCAAAAATGTCAAATGACGAACACATCAAATTAAGATGCAACACTGAAGAAAGTTCCCAAGATGCAAGCAAAAAAGAAATGGTAGATGAAGCTGAAGTTACCAATGAACATGAGAGGGTAGATGATCAGTTTTCTGATGCTCCCCCGACAAAACGGGCAAAGATTCAATGA 1284 0.4283 MHSSSSPVLPTIMESKCMKPPGSFHCSSVGGLNTNPTSLQAASLNPIRSVRPVFSTTAECPGGIPFSPISQHDKQYQDPPFASQTLGDNVSLETHSTTFASHPQQNDDISWGPDPMQDILSFPDIFSVQHDQVENGACYMNDDNVKKSDFGEWVEQLMTIDDTLHPNWNQLLGDDNAAEPTPKAMQVSQKPHTPSAEVNILCNSASTASQTKPRMRWSPELHEAFVEAVNKLGGSDKATPKGVLNLMNVEGLTIYHVKSHLQKYRTARYKPESPEETSEKKTSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKHLEMMFEKQKLIGDNKGSSTSNAPSAALLDTALPSPVDNSKMSNDEHIKLRCNTEESSQDASKKEMVDEAEVTNEHERVDDQFSDAPPTKRAKIQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05241 427 MobiDBLite consensus disorder prediction 266 287 - -
Trre13g05241 427 MobiDBLite consensus disorder prediction 64 87 - -
Trre13g05241 427 MobiDBLite consensus disorder prediction 70 87 - -
Trre13g05241 427 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 203 397 IPR044848 GO:0003700
Trre13g05241 427 MobiDBLite consensus disorder prediction 374 419 - -
Trre13g05241 427 FunFam Myb family transcription factor 211 269 - -
Trre13g05241 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 269 IPR017930 -
Trre13g05241 427 Pfam MYB-CC type transfactor, LHEQLE motif 299 342 IPR025756 -
Trre13g05241 427 Pfam Myb-like DNA-binding domain 214 265 IPR001005 -
Trre13g05241 427 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 266 IPR006447 GO:0003677
Trre13g05241 427 SUPERFAMILY Homeodomain-like 210 266 IPR009057 -
Trre13g05241 427 Coils Coil 300 320 - -
Trre13g05241 427 MobiDBLite consensus disorder prediction 363 427 - -
Trre13g05241 427 Gene3D - 211 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05241 Trre-Chr13 57696486 57699047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05241 92 368 G2-like Transcription Factor Family AT3G04450 48.123 6.21e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre13g05241 Myb_DNA-binding 5.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05241 - - mtr:25499705 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05241 13 57696486 57699047 Trre13g05241 13 57696486 57699047 ECH
Trre13g05241 13 57696486 57699047 Trre1g03806 1 37056449 37059377 PCT