Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05238 ATGGATTGGGTTTTTGTTCATAAAACATGGGACAAGTGGGCTTCTTCCAATATTGGTTCTGGTCTTCCTTTAAAAGCTGCTTTGTTGATTAATTACGATCCCACTGGACCCTCTCGTTTGTTATCTACTGTTGCTGAACAAGAAGGAATGAAAGTGAATATCATTGAATTGAGACATTTTGTGGATTTTGTCAGAAACAATCAACTCCAGACCGTGAGCTTCTATATTGGCTCCAATCAGTACTTGGTGACATCAATTCATGAGAATTGGTTTAGTGCAAGGTGCATAAACACATCAAAGCCTGCCGGGGAAGGTGCAATAGTTTTGCAAACAGCAGCGTATATCTTGGTTGCTCTGTATGAAGGTTCCATTGGTCCAGCATCTCGTGCTATGTCAGCTGCCGATCAGTTAACTGGACAGTTAGTGCGAAAGAATCTTTAG 441 0.4127 MDWVFVHKTWDKWASSNIGSGLPLKAALLINYDPTGPSRLLSTVAEQEGMKVNIIELRHFVDFVRNNQLQTVSFYIGSNQYLVTSIHENWFSARCINTSKPAGEGAIVLQTAAYILVALYEGSIGPASRAMSAADQLTGQLVRKNL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05238 146 PANTHER OS05G0241400 PROTEIN 1 146 - -
Trre13g05238 146 SUPERFAMILY Profilin (actin-binding protein) 10 144 IPR036140 -
Trre13g05238 146 Gene3D Dynein light chain 2a, cytoplasmic 9 145 - -
Trre13g05238 146 Pfam Profilin 9 144 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05238 Trre-Chr13 57679365 57680317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05238 1 146 Carbohydrate Esterase AT4G19410 65.541 3.39e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05238 - K19882 gmx:100802211 254.603