Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05234 ATGGGGACTCCTGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGATCCAGATGTATCTTGGATTGATGGACAGGTTTCCAAAATCACCGGACAGGATGCAGAAATTGAAGCTACCAATGGGAAGAAGGTTGTTGCAAAGTTATCAAAAATATTTCCCAAAGATACGGAAGCTCCTCCCGGGGGAGTGGATGATATGACTAAATTGTCCTATTTGCATGAGCCTGGAGTCCTGGAGAACTTAAAAATTAGATATGAATTAAATGAAATATATACTTATACTGGAAACATATTGATTGCAATAAATCCATTCCAAAAACTACCCCATCTTTACGATTTACACATGATGCAACAATACAAAGGAGCGCCATTTGGAGAGTTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCAATGGTCAATGAAGGGAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACGAAAATGCTTATGCAATACCTTGCTTTCTTAGGTGGTAGGGCAGCCACTGAAGGACGAACGGTTGAACAACAAGTTCTTGAATCAAATCCAGTTTTGGAAGCATTTGGTAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAGTTTGTCGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGCGCAGCTATTCGTACATACCTTCTTGAGAGATCTCGTGTTTGCCAAGTTAATGATCCGGAGCGCAACTATCACTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGACATCCTAAAACTTTTCATTACCTTAACCAGTCAAAATGCTTTGAACTGGCTGATATAAGTGATGCTCGGGAGTACCTTGCCACCAGGAGAGCTATGGATATTGTTGGAATAAGCGCAAAAGAGCAGGAAGCAATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGACTTTGCCAAAGGAAAGGAAGTTGATTCATCAGTTCCAAAAGATGATAAAGCCAAATTCCACTTAAAAACAACTGCCGAGCTCCTCATGTGTGATGTAGATGCCTTGGAAGATGCATTATGTAAGAGGGTCATGGTCACCCCTGAGGAAATTATAAAACGGAGCCTTGATCCCCAAAGTGCAGCAGTCAGCAGAGATGGATTCGCAAAAACAATTTATTCTAGGCTTTTTGACTGGTTGGTGGACAAGATTAATAATTCAATTGGACAAGATGCCAATTCTAAATCTTTGATCGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAAACTAACAGTTTTGAGCAGTTCTGCATTAATTTTACAAATGAGAAGTTGCAGCAGCATTTCAATCAACACGTGTTTAAAATGGAACAAGAAGAATATACGAAGGAACAGATCGATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCGGGAGGAATCGTTGCTCTCCTTGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTTCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATCAAACCAAAATTGTCTCGAACAGATTTCACTATTGCTCATTATGCTGGCGAGGTGCAGTACCAGTCTGATCAATTTTTAGATAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTATTGAGTTCTTCCAAATGTACTTTTGTAGCGGGCCTTTTTCCTCCACTTCCAGAAGAGACATCCAAATCTTCAAAGTTTTCTTCTATTGGTTCTCGTTTTAAGCTGCAACTACAGTCACTAATGGAGACATTAAACTCAACGGAGCCTCATTATGTTAGATGTGTGAAACCAAATAACCTCCTTAAGCCTGCAGTTTTTGAGAATATCAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGGATTAGTTGTGCTGGGTACCCAACTCGCCGTGCTTTCTTTGAGTTTATAAACCGATTTTCCCTCCTTGCCCCAGAGGCCACAGAAGCAAACCATGATGAGAAGGTTGTTTGCCAAAAGATTCTAGAAAAGATGGAGCTTAAAGGATATCAGATTGGAAAAACAAAGATATTTCTAAGAGCAGGTCAGATGGCTGAACTAGATGCTAAGAGAGCTCAAGTACTAAGTATAGCAGCAAAAACTATCCAGCGGCGTGTACGGACCCATCAGGCTCGTAGACATTATCTTGCATTACGAAAAAAAACCATATACGTGCAGTCTCTGTGGAGAGGAAGACTTGCATGCAAAATTTATCAGAACATGAGAAGGGAGGCTGCTGCTGTGAAAATTCAGAAGCACGTACGCAGACATGAATCAAGGAAAGGCTACATTAAACTCCATGCTTCAGTGCTTACTCTCCAAACAGCTTTGAGGGCAATCGCTGCTCGTAAAGAGTTTAGGTTTAAGAAACAGACTAAAGCTTCCACCATTATTCAGGCTCGCTGGCGGTGCCACAAGGCTTCCTCATATTATAAGAGGCTGAAGAGAGGTTCAATTGTGACGCAATGCCGATGGAGGGGGCGTGTAGCCAGAAAAGAGCTTAGGAGCCTGAAAATGGCTTCAAGAGAAACTGGCGCACTTAAAGAAGCAAAGGATAAGCTTGAAAAACGAGTGGAAGAACTTACATGGCGCCTCCAACTAGAAAAAAGTTTAAGGACTAATCTAGAAGAATCCAAAGCACAAGAGATAGCAAAACTGCAGAATTCCCTGCAGGAACTGCAGAGCAAAGCTGATGAAACCAATGCCATGCTTGTAAAGGAGCGAGAGATTGCAAAGAAAACTATTGAAGAAGCACCTCCTGTTGTTAAAGAGACCCAGGTTATTGTTGAAGACACACAGAAGGTTGAATCACTAACAGCAGAAGTTGAGAAATTAAAGACGTCGCTAGAGTCAGAGAAAATGAAAGCTGATGATTTTGAAAAGAAATATAACGAAGCCCAAGCTTCTAGTGAAGAACGGTATAAAAAATTAGAAGACACAGAAAAGAAGGCTCGTCAGCTCCAAGAATCATTGACCAGGCTAGAAGAGAAGATTAGTAATTTAGAATCAGAGAACCAGGTTCTACGTCAACAAGCTGTTTCCATGGCACCTAATAAGTTCCTATCAGGACGCTCCAGATCAATAATTCAGAGAGTTGACAGTGGACATATTGGAGGGGAAGCAAAGCCGCCACATTTGGATATGCATAGCCCATCAATGAACCACAGGGAATCTGCTGAGGTGGAGGATAAACCACAGAAGTCACTGAATGAGAAACAACAGGAGAACCAAGAGTTGCTCATTAGATGCCATGCAATTGAGACCCAGGAGAACAACGATGTCTTGGCTTATTGGTTATCCAATGCTTCTACACTTCTCTTGTTGCTCCAGCGCACACTTAAGGCGAGTGGTGCTGCTGGAATGGCTCCTCAACGCCGCCGTTCATCCTCAGCAACTCTGTTTGGGAGGATGACACAAAGTTTCCGTGGAGCTCCAGCGGGAGTCAATATTTCCATGATCAATGGTAGCATGAATGGGGGAGTAGATACACTAAGACAGGTTGAGGCCAAGTACCCAGCTTTGCTTTTCAAACAACAGCTTACAGCTTATGTGGAAAAGATATATGGAATGATTCGAGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCAAGAACATCCAGAGCAAGCTTAGTTAAGGGGTCATCACGTTCAGTTGCAAACACTGAAGCGCAAAAGGCCTTGATTGCTCACTGGCAGGGAATAGTCAAGAGCCTTGGGAACTTCTTAAATACTTTGAAAGCAAATAACGTCCCCCCATTTTTGGTTCGTAAGGTGTTCACTCAAATTTTTTCATTCATCAATGTCCAACTCTTTAATAGTCTTCTCTTAAGACGGGAGTGTTGCTCATTTAGTAATGGAGAATATGTGAAAGCTGGTTTGGCTGAATTGGAGCATTGGTGTTATAAAGCAACTGATGAGTATGCAGGTCCAGCCTGGGATGAGCTCAAACATATTAGGCAAGCTATTGGATTTCTGGTCATACATCAAAAACCAAAGAAAACGTTGGATGAAATAAGTCATGACCTGTGTCCAGTCCTCAGTATACAGCAGCTATATCGAATTAGCACCATGTATTGGGATGACAAGTACGGCACACATAGTGTGTCCCCCGATGTCATATCCAATATGCGAGTGTTGATGACTGAAGATTCAAATAATGCAGTGAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCATTCTCTGTTGATGACATATCAAAGTCAAATGAACAGATAGATATATCTGATATAGAGCCCCCGCCATTAATTCGTGAGAACTCTGGCTTTAGTTTCTTGTTGCCACGCCCAGATTGA 4461 0.4111 MGTPVNIIVGSHVWIEDPDVSWIDGQVSKITGQDAEIEATNGKKVVAKLSKIFPKDTEAPPGGVDDMTKLSYLHEPGVLENLKIRYELNEIYTYTGNILIAINPFQKLPHLYDLHMMQQYKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGHPKTFHYLNQSKCFELADISDAREYLATRRAMDIVGISAKEQEAIFRVVAAILHIGNIDFAKGKEVDSSVPKDDKAKFHLKTTAELLMCDVDALEDALCKRVMVTPEEIIKRSLDPQSAAVSRDGFAKTIYSRLFDWLVDKINNSIGQDANSKSLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFSNKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVQYQSDQFLDKNKDYVVPEHQDLLSSSKCTFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYVRCVKPNNLLKPAVFENINIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFSLLAPEATEANHDEKVVCQKILEKMELKGYQIGKTKIFLRAGQMAELDAKRAQVLSIAAKTIQRRVRTHQARRHYLALRKKTIYVQSLWRGRLACKIYQNMRREAAAVKIQKHVRRHESRKGYIKLHASVLTLQTALRAIAARKEFRFKKQTKASTIIQARWRCHKASSYYKRLKRGSIVTQCRWRGRVARKELRSLKMASRETGALKEAKDKLEKRVEELTWRLQLEKSLRTNLEESKAQEIAKLQNSLQELQSKADETNAMLVKEREIAKKTIEEAPPVVKETQVIVEDTQKVESLTAEVEKLKTSLESEKMKADDFEKKYNEAQASSEERYKKLEDTEKKARQLQESLTRLEEKISNLESENQVLRQQAVSMAPNKFLSGRSRSIIQRVDSGHIGGEAKPPHLDMHSPSMNHRESAEVEDKPQKSLNEKQQENQELLIRCHAIETQENNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPAGVNISMINGSMNGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQKALIAHWQGIVKSLGNFLNTLKANNVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGPAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSNEQIDISDIEPPPLIRENSGFSFLLPRPD 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05234 1486 ProSiteProfiles IQ motif profile. 831 858 IPR000048 GO:0005515
Trre13g05234 1486 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre13g05234 1486 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre13g05234 1486 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre13g05234 1486 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Trre13g05234 1486 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Trre13g05234 1486 CDD MYSc_Myo11 76 720 IPR036018 -
Trre13g05234 1486 ProSiteProfiles Dilute domain profile. 1099 1429 IPR002710 -
Trre13g05234 1486 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Trre13g05234 1486 FunFam Myosin 2 312 430 - -
Trre13g05234 1486 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre13g05234 1486 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre13g05234 1486 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre13g05234 1486 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre13g05234 1486 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre13g05234 1486 ProSiteProfiles IQ motif profile. 735 762 IPR000048 GO:0005515
Trre13g05234 1486 PANTHER MYOSIN 55 1417 - -
Trre13g05234 1486 CDD MyosinXI_CBD 1111 1452 IPR037975 GO:0007015
Trre13g05234 1486 Gene3D - 735 785 - -
Trre13g05234 1486 Gene3D - 786 832 - -
Trre13g05234 1486 Gene3D - 833 882 - -
Trre13g05234 1486 FunFam Class V myosin 439 581 - -
Trre13g05234 1486 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre13g05234 1486 FunFam unconventional myosin-Va 737 785 - -
Trre13g05234 1486 Gene3D - 667 733 - -
Trre13g05234 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
Trre13g05234 1486 FunFam Myosin heavy chain 252 307 - -
Trre13g05234 1486 Coils Coil 916 950 - -
Trre13g05234 1486 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre13g05234 1486 MobiDBLite consensus disorder prediction 1078 1111 - -
Trre13g05234 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 785 IPR027417 -
Trre13g05234 1486 Coils Coil 968 1051 - -
Trre13g05234 1486 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Trre13g05234 1486 MobiDBLite consensus disorder prediction 1077 1112 - -
Trre13g05234 1486 FunFam unconventional myosin-Va 833 881 - -
Trre13g05234 1486 Gene3D - 439 623 - -
Trre13g05234 1486 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Trre13g05234 1486 Pfam DIL domain 1305 1408 IPR002710 -
Trre13g05234 1486 SMART DIL_2 1304 1411 IPR002710 -
Trre13g05234 1486 Coils Coil 1109 1129 - -
Trre13g05234 1486 Gene3D Kinesin motor domain 65 662 IPR036961 -
Trre13g05234 1486 Pfam IQ calmodulin-binding motif 738 755 IPR000048 GO:0005515
Trre13g05234 1486 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Trre13g05234 1486 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Trre13g05234 1486 Pfam IQ calmodulin-binding motif 858 875 IPR000048 GO:0005515
Trre13g05234 1486 Coils Coil 877 911 - -
Trre13g05234 1486 Gene3D - 252 310 - -
Trre13g05234 1486 SMART iq_5 805 827 IPR000048 GO:0005515
Trre13g05234 1486 SMART iq_5 830 852 IPR000048 GO:0005515
Trre13g05234 1486 SMART iq_5 782 804 IPR000048 GO:0005515
Trre13g05234 1486 SMART iq_5 853 875 IPR000048 GO:0005515
Trre13g05234 1486 SMART iq_5 734 756 IPR000048 GO:0005515
Trre13g05234 1486 SMART iq_5 757 779 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05234 Trre-Chr13 57650602 57662121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05234 1 1486 Myosins gene family AT1G54560 81.711 0.0 2614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05234 K10357 - gmx:100816792 2634.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05234 13 57650602 57662121 Trre13g05234 13 57650602 57662121 ECH