Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05220 ATGGCTCCCGATGCTTCCGATGCACTTGCAGTGAGACAGATAGTTCAAAACTTTCTCAACGCCGCTCGTACCGGAAATCTCGATCTCTTAAAAAAATTTGCGGAACAATTAGATGAGGGAAAAAATTTAGCCAAAACAGTTGAAGCAATTAAAGATGCAAACAAACGTGGTGCACTTCACTTTGCTGCAATTGAAGGACAAACAGAGATTTGTAACTATCTACTACAGGATTTGAAGCTTAACATTGATTCTAAAGATGATGATGGTGAAACTGCTCTCATTCATGCTGCACGTCAAGGACATACGGCTACTGCTAAGTATCTTATCGACCGTGGTGCTGATGCTACTATTGCTAGCAATTTAGGAGCTACCGCATTGCATCATTCCGCAGGGATAGGAGATACCGAGTTACTTGAGCATCTGCTCTCCAAAGGAATTAATCCCGACTTAGAAAGTGATGCGGGAACACCTTTGGTTTGGGCTGCTGGTCATGCTCAAGAAGCTGCTGTTACTGTTCTATTGAAACATGGTGCAAATCCCAATGCTGAAACTGATGATGGCATTACCCCACTCCTTTCTTCTGTGGCAGCTGGTTCTGTAGCATGCTTAGAGCTGTTAATACAGGCAGGTGCAAAAGTAAATGTTATTGCTGGTGGAGCGACTCCTTTGCACATTGCAGCTGATAATGGGAGTCTAGAACTTCTAAATTCCTTATTGAAAGCTGGAGCTGATCCTAATGTCTCTGATGAGGATGGTGTTAAGCCAATACAGGTTGCAGCTGGAAGGGGTAATCGTGCAGCTGTTGAGATATTGTTCCCCGCAACATCTAAAATTGATGGTATTCCTTCTTGGTCTGTTGATGGGATACTTGAGTATATTCAATCAGAAAGTAAAACGCAGCAGGATAAATTGGTAGATGCTAAAGAAAATAGCCGTCCTGAGGATGCTGTTGCCCGAGAGCAAAATATCCCCGAGGTGACACCTGAAGCCAAAAAGAGAGCAGCAGAATCAAAATCAAGAGGGGATGAGGCTTTTAAAAGGCAAGACTATCATATGGCAATAGATTCCTACACACAAGCAATTGATCTGAATCCCAGCGATGGTACGTTGCTATCAAATAGAAGTCTATGTTGGATTAAGCTGGGTCAAGCCGAGCATGCTTTAGCTGATGCAAAAGCCTGTAGAGCATTAAGACCAGATTGGTCCAAAGCTTGTTATCGAGAAGGTGCAGCGTTACGTTTGTTGCAGAAGTTTGATGAAGCTGCAAATGCTTTTTACGAAGGTGTAATGCTTGACCCCGAGAGCAAGGAGCTTGTAAATGCGTTCAGGGAAGCTGTTGAAGCTGGAAAGAAATTTCATGGCACAGTTGAGAATAAATCATAG 1383 0.4317 MAPDASDALAVRQIVQNFLNAARTGNLDLLKKFAEQLDEGKNLAKTVEAIKDANKRGALHFAAIEGQTEICNYLLQDLKLNIDSKDDDGETALIHAARQGHTATAKYLIDRGADATIASNLGATALHHSAGIGDTELLEHLLSKGINPDLESDAGTPLVWAAGHAQEAAVTVLLKHGANPNAETDDGITPLLSSVAAGSVACLELLIQAGAKVNVIAGGATPLHIAADNGSLELLNSLLKAGADPNVSDEDGVKPIQVAAGRGNRAAVEILFPATSKIDGIPSWSVDGILEYIQSESKTQQDKLVDAKENSRPEDAVAREQNIPEVTPEAKKRAAESKSRGDEAFKRQDYHMAIDSYTQAIDLNPSDGTLLSNRSLCWIKLGQAEHALADAKACRALRPDWSKACYREGAALRLLQKFDEAANAFYEGVMLDPESKELVNAFREAVEAGKKFHGTVENKS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05220 460 Gene3D - 189 278 IPR036770 -
Trre13g05220 460 Gene3D - 119 188 IPR036770 -
Trre13g05220 460 Gene3D Tetratricopeptide repeat domain 332 447 IPR011990 GO:0005515
Trre13g05220 460 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Trre13g05220 460 Pfam Ankyrin repeats (3 copies) 122 182 IPR002110 GO:0005515
Trre13g05220 460 Pfam Ankyrin repeats (3 copies) 20 117 IPR002110 GO:0005515
Trre13g05220 460 Pfam Ankyrin repeats (3 copies) 185 249 IPR002110 GO:0005515
Trre13g05220 460 Pfam Tetratricopeptide repeat 341 367 IPR019734 GO:0005515
Trre13g05220 460 ProSiteProfiles Ankyrin repeat region circular profile. 218 250 - -
Trre13g05220 460 SUPERFAMILY TPR-like 333 446 IPR011990 GO:0005515
Trre13g05220 460 ProSiteProfiles Ankyrin repeat region circular profile. 88 120 - -
Trre13g05220 460 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Trre13g05220 460 PRINTS Ankyrin repeat signature 122 137 IPR002110 GO:0005515
Trre13g05220 460 PRINTS Ankyrin repeat signature 169 183 IPR002110 GO:0005515
Trre13g05220 460 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Trre13g05220 460 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Trre13g05220 460 SMART ANK_2a 121 150 IPR002110 GO:0005515
Trre13g05220 460 SMART ANK_2a 88 117 IPR002110 GO:0005515
Trre13g05220 460 SMART ANK_2a 54 84 IPR002110 GO:0005515
Trre13g05220 460 SMART ANK_2a 153 182 IPR002110 GO:0005515
Trre13g05220 460 SMART ANK_2a 251 280 IPR002110 GO:0005515
Trre13g05220 460 SMART ANK_2a 186 215 IPR002110 GO:0005515
Trre13g05220 460 SMART ANK_2a 218 247 IPR002110 GO:0005515
Trre13g05220 460 ProSiteProfiles Ankyrin repeat region circular profile. 121 153 - -
Trre13g05220 460 ProSiteProfiles Ankyrin repeat region circular profile. 186 215 - -
Trre13g05220 460 ProSiteProfiles TPR repeat profile. 334 367 IPR019734 GO:0005515
Trre13g05220 460 SMART tpr_5 402 435 IPR019734 GO:0005515
Trre13g05220 460 SMART tpr_5 368 401 IPR019734 GO:0005515
Trre13g05220 460 SMART tpr_5 334 367 IPR019734 GO:0005515
Trre13g05220 460 MobiDBLite consensus disorder prediction 308 343 - -
Trre13g05220 460 ProSiteProfiles Ankyrin repeat profile. 121 153 IPR002110 GO:0005515
Trre13g05220 460 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Trre13g05220 460 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 452 - -
Trre13g05220 460 Gene3D - 10 118 IPR036770 -
Trre13g05220 460 SUPERFAMILY Ankyrin repeat 19 273 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05220 Trre-Chr13 57547661 57552939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05220 70 305 Ion Channels AT2G25600 29.032 1.35e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05220 - - gmx:100798118 767.689