Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g05218 | ATGGTTGTTAAAGTAAAGAGAGAAAATCTTGAAGCATGCATGACATGTCCTCTTTGTCAAAAGCTTCTCAAAGATGCTACCACCATTTCTCTATGTCTTCACACTTTTTGCAGGAAGTGTATATATGAGAAGCTTTCAGATGAAGAGGTGGATTGTTGTCCGGTATGCGAAATTGATCTGGGAATCCTTCCGGTCGAAAAGCTCAGGCCTGATCACAATCTGCAAGATATTAGGACCAAAATATTCCCTTTTAAACATAAAAAGGTTCAAGCCGAAGAAGTTGTTCCCTCAACACCCCTGCCTGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACGCATACTAGCTTTACAGGAAAGAGAACAAAAAGTGGTACAAGAAAGGCTGCTGCTTTACGTGGCTGCAGTTTTACCCCTGAAGAATCCATAAAGAAAGAAGAAGCACACGATGAAGATAATCTGAATTCTTCTATAGGTGAGACTTCTAAGAAGCATAGATCCAATGAAGATTCAGACAACAATATTGACCTTACAGAAGGGAAGGCTGATCTCTGGACGCCCTTGAACTGTCTTGTTGAAGCGGCCAATAGAACAAAGCCCTCCAGGTCAAATTTACAAGGGACTGCCAAATTAGAGTCTCCAATTACTCCTCATGGTGGACTAGTGATGTCAGAAACTACACCTAAATCGGATCCACCTACATCTGTCCAGAGTGAATTACATGTGCCTAAAACCAAAAACAAGAGTAATGGACATAAAAGAAAGTTTGGAGATGACAAGGACGGAAACACCTTGCCTTCAGGACCAGTGAAGCGAAAACGGCCGCGTCCTTCGAATCAGAAGAGAGCAGCAGCATCTGAGATGTCTGCTTCAGCCCAACTCATGTTAGATGCAACAGGGAGCAGGTGCAACAGGAAAAACAGTCCTATTTGGTTTACATTAGTTGCTTCGGAAGACCAGAATGGAGAAGTTTCCTTGCCACAGATCTCGGCTTGCTATTTAAGAATAAAGGATGGTACTGTACCCATCTCATTTATTCAAAAGTACCTCATGACGAAACTTAATCTTGCTAGCGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCTGTGCTACCATCTTTGCAAATGCATAACTTAGTAGATCTGTGGTTCTGCACATCATCAACATCGAAAAAGCTACCGGCATCTGTGGGATCTTCAGCTAAGGACTTTGTGATGGCTTTATCGTATTGTCGAAAGACCTTACCTCATTGA | 1281 | 0.4254 | MVVKVKRENLEACMTCPLCQKLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCEIDLGILPVEKLRPDHNLQDIRTKIFPFKHKKVQAEEVVPSTPLPAKRKERSLSSLVVSAPKVSTHTSFTGKRTKSGTRKAAALRGCSFTPEESIKKEEAHDEDNLNSSIGETSKKHRSNEDSDNNIDLTEGKADLWTPLNCLVEAANRTKPSRSNLQGTAKLESPITPHGGLVMSETTPKSDPPTSVQSELHVPKTKNKSNGHKRKFGDDKDGNTLPSGPVKRKRPRPSNQKRAAASEMSASAQLMLDATGSRCNRKNSPIWFTLVASEDQNGEVSLPQISACYLRIKDGTVPISFIQKYLMTKLNLASEAEVEIMCRGQPVLPSLQMHNLVDLWFCTSSTSKKLPASVGSSAKDFVMALSYCRKTLPH | 426 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g05218 | 426 | Pfam | Zinc finger, C3HC4 type (RING finger) | 16 | 56 | - | - | |
Trre13g05218 | 426 | SUPERFAMILY | RING/U-box | 10 | 80 | - | - | |
Trre13g05218 | 426 | MobiDBLite | consensus disorder prediction | 260 | 275 | - | - | |
Trre13g05218 | 426 | MobiDBLite | consensus disorder prediction | 144 | 186 | - | - | |
Trre13g05218 | 426 | ProSitePatterns | Zinc finger RING-type signature. | 32 | 41 | IPR017907 | - | |
Trre13g05218 | 426 | MobiDBLite | consensus disorder prediction | 205 | 297 | - | - | |
Trre13g05218 | 426 | MobiDBLite | consensus disorder prediction | 235 | 252 | - | - | |
Trre13g05218 | 426 | ProSiteProfiles | Zinc finger RING-type profile. | 16 | 57 | IPR001841 | - | |
Trre13g05218 | 426 | MobiDBLite | consensus disorder prediction | 205 | 219 | - | - | |
Trre13g05218 | 426 | MobiDBLite | consensus disorder prediction | 147 | 185 | - | - | |
Trre13g05218 | 426 | CDD | RING-HC_PCGF | 14 | 57 | - | - | |
Trre13g05218 | 426 | Gene3D | - | 297 | 403 | - | - | |
Trre13g05218 | 426 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 2 | 424 | IPR044807 | GO:0004842 | |
Trre13g05218 | 426 | SMART | ring_2 | 16 | 56 | IPR001841 | - | |
Trre13g05218 | 426 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 107 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g05218 | Trre-Chr13 | 57536083 | 57543121 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g05218 | 1 | 345 | C3H Transcription Factor Family | AT2G30580 | 44.932 | 3.58e-84 | 259 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g05218 | K16277 | - | gmx:100783999 | 660.218 |