Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05218 ATGGTTGTTAAAGTAAAGAGAGAAAATCTTGAAGCATGCATGACATGTCCTCTTTGTCAAAAGCTTCTCAAAGATGCTACCACCATTTCTCTATGTCTTCACACTTTTTGCAGGAAGTGTATATATGAGAAGCTTTCAGATGAAGAGGTGGATTGTTGTCCGGTATGCGAAATTGATCTGGGAATCCTTCCGGTCGAAAAGCTCAGGCCTGATCACAATCTGCAAGATATTAGGACCAAAATATTCCCTTTTAAACATAAAAAGGTTCAAGCCGAAGAAGTTGTTCCCTCAACACCCCTGCCTGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACGCATACTAGCTTTACAGGAAAGAGAACAAAAAGTGGTACAAGAAAGGCTGCTGCTTTACGTGGCTGCAGTTTTACCCCTGAAGAATCCATAAAGAAAGAAGAAGCACACGATGAAGATAATCTGAATTCTTCTATAGGTGAGACTTCTAAGAAGCATAGATCCAATGAAGATTCAGACAACAATATTGACCTTACAGAAGGGAAGGCTGATCTCTGGACGCCCTTGAACTGTCTTGTTGAAGCGGCCAATAGAACAAAGCCCTCCAGGTCAAATTTACAAGGGACTGCCAAATTAGAGTCTCCAATTACTCCTCATGGTGGACTAGTGATGTCAGAAACTACACCTAAATCGGATCCACCTACATCTGTCCAGAGTGAATTACATGTGCCTAAAACCAAAAACAAGAGTAATGGACATAAAAGAAAGTTTGGAGATGACAAGGACGGAAACACCTTGCCTTCAGGACCAGTGAAGCGAAAACGGCCGCGTCCTTCGAATCAGAAGAGAGCAGCAGCATCTGAGATGTCTGCTTCAGCCCAACTCATGTTAGATGCAACAGGGAGCAGGTGCAACAGGAAAAACAGTCCTATTTGGTTTACATTAGTTGCTTCGGAAGACCAGAATGGAGAAGTTTCCTTGCCACAGATCTCGGCTTGCTATTTAAGAATAAAGGATGGTACTGTACCCATCTCATTTATTCAAAAGTACCTCATGACGAAACTTAATCTTGCTAGCGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCTGTGCTACCATCTTTGCAAATGCATAACTTAGTAGATCTGTGGTTCTGCACATCATCAACATCGAAAAAGCTACCGGCATCTGTGGGATCTTCAGCTAAGGACTTTGTGATGGCTTTATCGTATTGTCGAAAGACCTTACCTCATTGA 1281 0.4254 MVVKVKRENLEACMTCPLCQKLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCEIDLGILPVEKLRPDHNLQDIRTKIFPFKHKKVQAEEVVPSTPLPAKRKERSLSSLVVSAPKVSTHTSFTGKRTKSGTRKAAALRGCSFTPEESIKKEEAHDEDNLNSSIGETSKKHRSNEDSDNNIDLTEGKADLWTPLNCLVEAANRTKPSRSNLQGTAKLESPITPHGGLVMSETTPKSDPPTSVQSELHVPKTKNKSNGHKRKFGDDKDGNTLPSGPVKRKRPRPSNQKRAAASEMSASAQLMLDATGSRCNRKNSPIWFTLVASEDQNGEVSLPQISACYLRIKDGTVPISFIQKYLMTKLNLASEAEVEIMCRGQPVLPSLQMHNLVDLWFCTSSTSKKLPASVGSSAKDFVMALSYCRKTLPH 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05218 426 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Trre13g05218 426 SUPERFAMILY RING/U-box 10 80 - -
Trre13g05218 426 MobiDBLite consensus disorder prediction 260 275 - -
Trre13g05218 426 MobiDBLite consensus disorder prediction 144 186 - -
Trre13g05218 426 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Trre13g05218 426 MobiDBLite consensus disorder prediction 205 297 - -
Trre13g05218 426 MobiDBLite consensus disorder prediction 235 252 - -
Trre13g05218 426 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Trre13g05218 426 MobiDBLite consensus disorder prediction 205 219 - -
Trre13g05218 426 MobiDBLite consensus disorder prediction 147 185 - -
Trre13g05218 426 CDD RING-HC_PCGF 14 57 - -
Trre13g05218 426 Gene3D - 297 403 - -
Trre13g05218 426 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 424 IPR044807 GO:0004842
Trre13g05218 426 SMART ring_2 16 56 IPR001841 -
Trre13g05218 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 107 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05218 Trre-Chr13 57536083 57543121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05218 1 345 C3H Transcription Factor Family AT2G30580 44.932 3.58e-84 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05218 K16277 - gmx:100783999 660.218