Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05214 ATGGAAAGAGTATTTTCAGTTGCTGAAATATCAGAGCAATATTGGTTAACATCAAAAGAGTGCAAGGAAAAAGAATCAAAGATGAATCGTAGTGAATCAGAATGGGCTTTTCAACAGTTTTTACAAGAAGCTGCTATAGAAAGTGAAACAAATAACACATCAAATGCAAAACCTTGTAGTTCATCTTCAACTTCAACTTCTTCTTCAAACGTTGATGTTAAACTCAACATAAATAATATTGATTATGAGGAGTATCATTCTATTCTCAAGACCAAACTTGATCTTGCCTGCGCCGCCGTTGCTATGTCTCGGGGATCTTTGGTCAATTCTAAGGGTCCTGACAATGGATCACAGGCATCTCATCCACCTCTGCCTGCTTTAAAAGAATCTGGCCCTTCTGGAAATGATCCATCTAAATTAAAAAATAAAGATGTGAAAGTAGCTGCTGGAGTTCCTTCCATGCAAAAGAAACCTGCTGTTACAATCAAGTCAATGACAAGTGGTTCATCAGATGATGAAGAAGCCGAGGGAGAGATTAATATGAACGGAAACATGAACCCTTCTGATGCGAAAAGAGTTAAGAGGATGCTCTCTAATCGGGAGTCTGCTAGACGCTCAAGAAGACGAAAGCAAGCTCATTTAACTGAGCTTGAAACACAGGTCTCTCAATTAAGAAGTGAAAAATCTTCATTGTTAAAGCTTTTAGCAGATGTGAACCAAAAATACACTGATTCTGCTACTGACAACAGAGTATTAAAAGCTCAAAATGAAACATTAAGAGCAAAGGTGGAGTTGGCTGAAGGGAGGGTTACAAAATCTTCGGGGTTTAATCCAATGGTTAATGCAATGTCTGAGATGCCATCAATAATGGGAATGGAAATGTCATTATTTGATGGAAGCCCGTCTGAGTCATCAGCCGATGCATCCGTAGTACCTATGCAAGAACATCGAAATAATCACTTTTTTCAACCAACTTCTAATAATCTTATGTCTGGTCATGATATGAGAGGAGTCAATGTTTCTTCAGCTGAAAGTGTGCTGAAGAACACTGCAGCTGGTGGGAACAAGATAAGAAGGGCGAATTCCCTGCCACGGGTGGCTAGCTTCGAACATCTTCAGACTCGGATTCGCAGTGGTGCTGACGAAGACAAGTAA 1155 0.3974 MERVFSVAEISEQYWLTSKECKEKESKMNRSESEWAFQQFLQEAAIESETNNTSNAKPCSSSSTSTSSSNVDVKLNINNIDYEEYHSILKTKLDLACAAVAMSRGSLVNSKGPDNGSQASHPPLPALKESGPSGNDPSKLKNKDVKVAAGVPSMQKKPAVTIKSMTSGSSDDEEAEGEINMNGNMNPSDAKRVKRMLSNRESARRSRRRKQAHLTELETQVSQLRSEKSSLLKLLADVNQKYTDSATDNRVLKAQNETLRAKVELAEGRVTKSSGFNPMVNAMSEMPSIMGMEMSLFDGSPSESSADASVVPMQEHRNNHFFQPTSNNLMSGHDMRGVNVSSAESVLKNTAAGGNKIRRANSLPRVASFEHLQTRIRSGADEDK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05214 384 PANTHER BASIC LEUCINE ZIPPER 63 1 379 - -
Trre13g05214 384 Coils Coil 200 241 - -
Trre13g05214 384 MobiDBLite consensus disorder prediction 46 70 - -
Trre13g05214 384 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700|GO:0006355
Trre13g05214 384 MobiDBLite consensus disorder prediction 108 141 - -
Trre13g05214 384 MobiDBLite consensus disorder prediction 155 217 - -
Trre13g05214 384 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 241 IPR004827 GO:0003700|GO:0006355
Trre13g05214 384 Pfam bZIP transcription factor 190 241 IPR004827 GO:0003700|GO:0006355
Trre13g05214 384 Coils Coil 249 269 - -
Trre13g05214 384 Gene3D - 190 246 - -
Trre13g05214 384 Pfam Basic leucine-zipper C terminal 258 380 IPR020983 -
Trre13g05214 384 FunFam BZIP transcription factor 189 240 - -
Trre13g05214 384 SMART brlzneu 187 251 IPR004827 GO:0003700|GO:0006355
Trre13g05214 384 SUPERFAMILY Leucine zipper domain 191 241 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05214 Trre-Chr13 57505620 57508784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05214 1 280 bZIP Transcription Factor Family AT4G02640 35.331 1.16e-34 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g05214 bZIP_C 5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05214 K25784 - gmx:778137 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05214 13 57505620 57508784 Trre13g05214 13 57505620 57508784 ECH
Trre13g05214 13 57505620 57508784 Trre1g03910 1 43310605 43315787 PCT