Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05211 ATGGAGCTACCTTCGAACTTGTTGTTTGATGAGGCAAGCCCAGAGTGGATGAACAAAGGAGACAACGCATGGCAATTAACAGCAGCAACAATGGTTGGGCTTCAAAGCATTCCTGGGCTTGTAATCCTTTACGGAAGCCTGGTTAAGAAAACATGGGCCATAAACTCTGCTTTCATGGCTTTTTACGCTTTTGCAGCAGTTCTCCTATGTTGGGTTTCATGGGCTTATCACATGTCATTTGGGGACAAAATGGTATTTTTCCTAGGGAAACCAGATATAGCATTGGATGAGAAGTTTTTGTTAGGAAAAGCATTTTTGGGAAATTTTCCTAATGCTACAATGGTATTTTATCAAGGTGTATTTGCTGGTATTACTTTGATTTTAATAGCTGGTGCTTTACTTGGGAGAATGAATATTCGTGCATGGATGTTGTTTGTGCCACTTTGGGTAACATTCTCGTACACTGTTGTTGCTTTTAGTATTTGGTGTCCTGATGGATGGTTGGCTAAACGTGGTGTTATTGATTTTGCTGGTGGTTATGTTATTCACCTCTCTGCTGGAGTTGCTGGTTTCACTGCAGCTTATTGGGTTGGTCCTCGAGCAGAGAAGGACAGGGAAACATTTCCGGCAGCAGCAAACAACATGATAATGGTGCTTGCAGGCGCAGGCCTGCTTTGGATGGGTTGGAGTGGATTCAACGGTGGAGGTCCATTTGTTGCTAGTACCATTGCATCTCTTGCTGTCCTAAACACACACGTGTGTACTGCTGCTAGCATCATCGTATGGATCACACTCGATACCTTCTACTTCGGCAAGCCCACCGTGTTTGGTGCCGTACAAGGCATGATCACTGGTCTCGTTTGTATCACACCCGCCGCAGGAGTTGTGCAGGGGTGGGCAGCAATCTTAATGGGTTTGATCTCAGGAAGTATTCCATGGTACACAATGATGGTACTCCACAACAAGGTTAATTTCTTAATGAAAATTGACGATCCCATGGCGGTGTTCCACACCCACGCAGTAGCCGGTGCTCTTGGCGGAATTCTCACCGGCTTCTTTGCCGTGCCAAAATTATGTCGTCTCTTCTACATGGTGCCCGATTGGGAAAAATACATTGGCCTCGCCTATGGCCTACAAAATAGTGGTGCAACTCGAGCGGGTTTGAAACAAATGTTGATCCAAGTTGAGGCAATAGTTTTTGTGATTTGCTACAATGTTGTTGTGACTAGTTTGATTTGCTTGCTTGTGAGAGTCATGGTACCACTTAGGCTTGATAGTGATGCATTGCAAATGGGTGATAGGGCAATTCATGGAGAGGATGCTTTTGCCTTGCATAGTGAGACAACTAAATTTGTGAACATAAAGCGCAATCAGATTTATGATACACAAGCTTTCTCGTCCAATTATGAGTCTAGGTCATTAGGTGAGCTTCAAATGGTATGA 1443 0.4421 MELPSNLLFDEASPEWMNKGDNAWQLTAATMVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVSWAYHMSFGDKMVFFLGKPDIALDEKFLLGKAFLGNFPNATMVFYQGVFAGITLILIAGALLGRMNIRAWMLFVPLWVTFSYTVVAFSIWCPDGWLAKRGVIDFAGGYVIHLSAGVAGFTAAYWVGPRAEKDRETFPAAANNMIMVLAGAGLLWMGWSGFNGGGPFVASTIASLAVLNTHVCTAASIIVWITLDTFYFGKPTVFGAVQGMITGLVCITPAAGVVQGWAAILMGLISGSIPWYTMMVLHNKVNFLMKIDDPMAVFHTHAVAGALGGILTGFFAVPKLCRLFYMVPDWEKYIGLAYGLQNSGATRAGLKQMLIQVEAIVFVICYNVVVTSLICLLVRVMVPLRLDSDALQMGDRAIHGEDAFALHSETTKFVNIKRNQIYDTQAFSSNYESRSLGELQMV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05211 480 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886
Trre13g05211 480 PRINTS Rhesus blood group protein signature 216 234 IPR002229 GO:0005886
Trre13g05211 480 PRINTS Rhesus blood group protein signature 247 269 IPR002229 GO:0005886
Trre13g05211 480 PRINTS Rhesus blood group protein signature 302 320 IPR002229 GO:0005886
Trre13g05211 480 FunFam Ammonium transporter 6 445 - -
Trre13g05211 480 Gene3D Ammonium transporter AmtB like domains 5 460 IPR029020 -
Trre13g05211 480 Pfam Ammonium Transporter Family 23 441 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre13g05211 480 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre13g05211 480 PANTHER AMMONIUM TRANSPORTER MEP2 5 450 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre13g05211 480 SUPERFAMILY Ammonium transporter 16 424 - -
Trre13g05211 480 NCBIfam ammonium transporter 21 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05211 Trre-Chr13 57480487 57482875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05211 112 475 Inorganic Solute Cotransporters AT2G38290 53.552 1.31e-124 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05211 K03320 - gmx:100782944 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05211 13 57480487 57482875 Trre13g05211 13 57480487 57482875 ECH