Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05202 ATGGATCCCTCACTTTGTGCCAATGGTTGTGGCTTCTTTGGTTCTGCTTCAACCAAGAACCTTTGTTCAAAGTGTTACAAAGATTATCTCAAGGAAAACGTTACCAAATCAAATGATGAAAACTCAAACTCAACATCTTCTTCTTGTCCTTCAAAGATCCCTAATGTTGATGATGATATTTGTGATGTTGTAGCAGCTGTTTCTCTCACTGACAATGATAACTTGAAGAAGAAGAAAAATAGGTGCAAGAGTTGTAACAAAAAAGTGGGACTAATAGGGTTCAAGTGTCGTTGCGGCGATGTGTTTTGTGGAATGCATAGATACCCAGAAGAACATACATGCAATGTCAATTTAAAGGAGATTGGTCGTCAAATATTAGATAAACAAAATCCTTTATGTATGGGTGACAAGTTAGAACACCGAATCTAG 429 0.3706 MDPSLCANGCGFFGSASTKNLCSKCYKDYLKENVTKSNDENSNSTSSSCPSKIPNVDDDICDVVAAVSLTDNDNLKKKKNRCKSCNKKVGLIGFKCRCGDVFCGMHRYPEEHTCNVNLKEIGRQILDKQNPLCMGDKLEHRI 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05202 142 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
Trre13g05202 142 Gene3D - 1 52 - -
Trre13g05202 142 FunFam Zinc finger AN1-type containing 6 58 137 - -
Trre13g05202 142 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Trre13g05202 142 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Trre13g05202 142 Pfam AN1-like Zinc finger 82 115 IPR000058 GO:0008270
Trre13g05202 142 ProSiteProfiles Zinc finger AN1-type profile. 76 122 IPR000058 GO:0008270
Trre13g05202 142 Gene3D - 63 136 IPR035896 -
Trre13g05202 142 SMART AN1_Zf_4 82 119 IPR000058 GO:0008270
Trre13g05202 142 MobiDBLite consensus disorder prediction 36 56 - -
Trre13g05202 142 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 47 - -
Trre13g05202 142 MobiDBLite consensus disorder prediction 36 53 - -
Trre13g05202 142 SUPERFAMILY AN1-like Zinc finger 71 136 IPR035896 -
Trre13g05202 142 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05202 Trre-Chr13 57424355 57424783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05202 5 139 C2H2 Transcription Factor Family AT3G52800 39.610 4.02e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05202 - - tpra:123902604 181.03