Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05198 ATGTTGAATGAAGGAGAAGTAGGATCAGAGCAGTTTGAGTTAGAGCAATTGAGGACAACAACTAGTAGTACTAGTCTTCTTCATTCCTCTTCTACTACAAGTGCAAACAATAACACCTTCCACTACATACCCTTAATTCATCCTCCTCCTCCTAATAATAATTTCAACAGCCACCCTTCTACTTCCAATTCTCAATTTCAAACTCAAACAAATTTCTTTCCTCCATCAATATTATTGCCTCACCACTCTCCTAAACATAATAATTATCACAACTTCAATTTCCAGATCCAAACTCCGCCACCTCCATTCATCGATTCCACCTGGACCAACCATGAACTTCTTGCACTCTTCAAGATCACATCTACCATCCACAATTTCTTCCCAGATCAACTAATCACATGGGACCATGTCTCAAGGAAGCTAGCAGAGATTGGGATTAACAAGAGTGCTGAAAAGTGTAAGGATACGTTTGAAGATGATAACATATCATCACTTTTTAAGATTCATAATAATCATAATAATGATAATTACTCTCAGTTTATTAGTGAGCTTCAAGATCTTTATCAAGGTGGTGTTGGTGTTGATGAACAACAAAATTCAGATGAAAAGGGAAACATCCAAGAAGAAAATTCAAGAGATGATGATAATGATACCGACATAGTAGTAGTAACCAAACAATGTGATGATGATGATGAAGACAAGGTGATGGAAAAATCAAAGAGAAAGAGGAAGAGACGAAATAGGTTTGAAATGTTGAAGAGTTTTTGTGAGAAAGTGGTTAACAAAATGATGACACAACAAGAAGAGATACACAATAAGCTACTTGAAGATATGCTCAAAAGAGATAAAGAGAAAGTTGCTAGAGAAGAAGAATGGAAAAATCAAGAGATAGAAAGGATGAACATGATGGCACAAGAACAAGCTATTGCAAGTAATAGACAATCCACCATAATTGATTTCTTGAATAAATATCTATCCATAGATGGAAATGGCAAAGGATGTTCTTCTTCACAAAACCCTAATGATATTCAACCTTGTAACAATATTCTTGAAGTTGAATCAACACCTTCTTGTTCTAATGTGATAGCACAACTACAAGCACAACAAAACCCTAGCTCAAGTGAGACAGTAATAGAGTCAAATTACACTTCTACCCTTGTTGTGCCAACAATAATAATGGAGAAATTAGAGGATAGGAGAAGGTGGCCAAGAGATGAAGTATTGGCACTCATAAACCTAAAGTCTACTACAAGTGTAATAACTAGAAGCAACAATGTTGAAGAAAAAGAAGGAAATAGTAACATTAAGGGACCATTGTGGGAGAGAATCTCTGAAGGGATGTTGGAAATGGGATACAAGAGAAGTGCAAAGAGATGTAAAGAAAAATGGGAAAATATAAACAAGTATTTTAAGAAAACAAAAGATGTTGCCAATAAGAAGAAAAGGTCATTGGATTCTAGGACATGTCCTTATTTTCATCAACTTAGTTCTTTGTATAATAATCAGCAGGAGGGAAAACTAATTATTCAATCTCAATCTCAATTAGTAACAAATCCAATCTCAAATTCAGCTGACCAAGTAGATGATCAACCACAAGCTCATTCTCCAGTGGGGTCTAAGAATGATGCAGCATGTTGA 1638 0.3541 MLNEGEVGSEQFELEQLRTTTSSTSLLHSSSTTSANNNTFHYIPLIHPPPPNNNFNSHPSTSNSQFQTQTNFFPPSILLPHHSPKHNNYHNFNFQIQTPPPPFIDSTWTNHELLALFKITSTIHNFFPDQLITWDHVSRKLAEIGINKSAEKCKDTFEDDNISSLFKIHNNHNNDNYSQFISELQDLYQGGVGVDEQQNSDEKGNIQEENSRDDDNDTDIVVVTKQCDDDDEDKVMEKSKRKRKRRNRFEMLKSFCEKVVNKMMTQQEEIHNKLLEDMLKRDKEKVAREEEWKNQEIERMNMMAQEQAIASNRQSTIIDFLNKYLSIDGNGKGCSSSQNPNDIQPCNNILEVESTPSCSNVIAQLQAQQNPSSSETVIESNYTSTLVVPTIIMEKLEDRRRWPRDEVLALINLKSTTSVITRSNNVEEKEGNSNIKGPLWERISEGMLEMGYKRSAKRCKEKWENINKYFKKTKDVANKKKRSLDSRTCPYFHQLSSLYNNQQEGKLIIQSQSQLVTNPISNSADQVDDQPQAHSPVGSKNDAAC 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05198 545 ProSiteProfiles Myb-like domain profile. 399 467 IPR001005 -
Trre13g05198 545 Pfam Myb/SANT-like DNA-binding domain 399 497 IPR044822 -
Trre13g05198 545 Gene3D - 402 472 - -
Trre13g05198 545 PANTHER FI21293P1 103 533 - -
Trre13g05198 545 MobiDBLite consensus disorder prediction 521 545 - -
Trre13g05198 545 Coils Coil 287 307 - -
Trre13g05198 545 MobiDBLite consensus disorder prediction 201 217 - -
Trre13g05198 545 MobiDBLite consensus disorder prediction 48 67 - -
Trre13g05198 545 CDD GT1 400 474 - -
Trre13g05198 545 MobiDBLite consensus disorder prediction 521 537 - -
Trre13g05198 545 MobiDBLite consensus disorder prediction 194 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05198 Trre-Chr13 57401264 57403146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05198 249 500 Trihelix Transcription Factor Family AT5G28300 47.212 3.72e-65 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre13g05198 Myb_DNA-bind_4 3.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05198 - - tpra:123890829 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05198 13 57401264 57403146 Trre13g05198 13 57401264 57403146 ECH
Trre13g05198 13 57401264 57403146 Trre1g03927 1 43817835 43820114 PCT