Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05187 ATGAATGGTGAAACAGATGACTCTGACTTTGTTGAAGTTGATCCAACCGGTAGATATGGCAGATACAATGAAGTTCTTGGTAAAGGAGCTTCCAAGACAGTATATAGAGCATTTGATGAGTATCAAGGAATTGAAGTTGCTTGGAATCAAATCAAACTATATGATTTCTTGCAAAACCCCGAAGATCTCGAGAGGCTTTACAGTGAAATTCATCTTCTCAAGACATTGAAACACAGTAACATTATGAAATTTTACACATCTTGGGTTGATACTGCAAATAGGAATATCAACTTCATTACTGAATTGTTTACTTCTGGTACTCTTAGACAGTATAGGCAAAAGCACAAGAGGGTTAACATAAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGCAAGGACTTCTATATCTTCATAGCCATGACCCACCTGTGATCCATAGAGATCTTAAATGTGATAATATTTTCATTAATGGTAACCAAGGGGAAGTTAAGATTGGGGATCTTGGTTTGGCTGCGGTTCTCCGGAAATCTCATGCTGCTCATTGTGTAGGAACGCCCGAATTCATGGCACCAGAAGTATACCAAGAGGAATATAATGAACTAGTTGACATATATTCTTTTGGTATGTGTGTATTAGAAATGGTCACATTTGAATATCCTTATAGTGAATGCAGCCATCCGGCACAAATCTACAAGAAAGTTTCTTCTGGGAAAAAACCAGATGCTTTGTATAAAGTGAAGGATCCAGAAGTGCGAGAATTCATTGAGAAATGCCTCGCAACAGTGTCTCTAAGACTCTCTGCAAGGGAGCTTCTGGATGATCCTTTTCTTCGAATTGATGATGACGAATATGATTTGAGATCGGCAGATGTTGTAGAGTTTGGTGACTTGGGTCCTCTCGTTTGTCAGTCATTCCTTTCACTCGACCGTAGCTATAGTAACATAAGTACTGATTATTCAAATGGTTTTGGGTATGAAGTAGATTGGTATTCTCATCCAGCTGAGATTGAACATGGAATTGAACTTTTCGAGTGCCATGACGATGAACCCTCCAAAGATGTTGACATAAGCATCAAAGGCAAGAGAAAAGACGACGGTGGCATATTTTTGAGACTAAGAATTGCAGACAAAGAAGGTCATATCCGAAACATTTATTTCCCATTCGACATAGAGTTGGATACAGCATTAAGCGTAGCATCTGAAATGATTGCGGAACTCGACATTATGGACCAGGATGTTATCAGCATAGCTGGTATGATAGATGGAGAAATTGCTTCCTTAGTACCCGAATGGAGGACTGAACCAGAAAATGAGGAAACCACCAACTATGCAAATCAAAGCTTCTGTGACAATTGTGTGTCTAATCATACTACAGTTACAGATTTTCTTTCACCTAATGAAGGTGGAAAAAACTTGCAGCTTCCTCACTGCTGCACGCACGGATGCGCTTCAATGCATGGCCGGTTCGAGGAGATTATATTCCAATCCGAGGAGTATGACGACAACCACATTAGCAAGGATGCACCTAACATATCAAGTGAATTAGACTACTTGCAGTATCAGGAATCATGGAATCATCACGAAAGCCGTGAACTGAGTCCTGTTGAGTCTAGTCGAAGCCATTCAGGTGAACAATATGAACTATTAGATAATTCATTGTTGACCGAAGATAAAAGAGAGGCTGTATGGGAAAACAGTTTCGGACCCAACGCTGCAAAGTCCTCGAAAAATTTATCAGGAAACAATTATTTGTCTACTATTGATTCACTATATTGCGGGGTTAAGAGCGATTATGAGAAAGAGATCCAACATGAGTTGAGGTGGCTCAAAGCAAAATATCAGGCGGAGTTGATGGAACTGAGGGATCAACAATTAGGTCTAGAAGCTAAATCTCCACATACTACTCGTAAGCACGAAACAACAGCAGAAACAGTAAACGGATTCGATAACAGGAACTATGATTCTAGTTACCATTCTCAAGAACACAAGAGCCACCCCAATTTGGATACCCGAAGGGCCCAAAATTGCGCGATGACATGTTCTGATGAAGACGTGGTAACTGCAAAGAGTTTTTACACAAGGTTATTGCTTCCAGGCACACTACATAGAACTGTTTCCCTCCCTGTTGATGCTGTTGATGTATAA 2145 0.4023 MNGETDDSDFVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYQGIEVAWNQIKLYDFLQNPEDLERLYSEIHLLKTLKHSNIMKFYTSWVDTANRNINFITELFTSGTLRQYRQKHKRVNIRAVKHWCRQILQGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAVLRKSHAAHCVGTPEFMAPEVYQEEYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVSSGKKPDALYKVKDPEVREFIEKCLATVSLRLSARELLDDPFLRIDDDEYDLRSADVVEFGDLGPLVCQSFLSLDRSYSNISTDYSNGFGYEVDWYSHPAEIEHGIELFECHDDEPSKDVDISIKGKRKDDGGIFLRLRIADKEGHIRNIYFPFDIELDTALSVASEMIAELDIMDQDVISIAGMIDGEIASLVPEWRTEPENEETTNYANQSFCDNCVSNHTTVTDFLSPNEGGKNLQLPHCCTHGCASMHGRFEEIIFQSEEYDDNHISKDAPNISSELDYLQYQESWNHHESRELSPVESSRSHSGEQYELLDNSLLTEDKREAVWENSFGPNAAKSSKNLSGNNYLSTIDSLYCGVKSDYEKEIQHELRWLKAKYQAELMELRDQQLGLEAKSPHTTRKHETTAETVNGFDNRNYDSSYHSQEHKSHPNLDTRRAQNCAMTCSDEDVVTAKSFYTRLLLPGTLHRTVSLPVDAVDV 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05187 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Trre13g05187 714 MobiDBLite consensus disorder prediction 646 669 - -
Trre13g05187 714 Gene3D Phosphorylase Kinase; domain 1 4 101 - -
Trre13g05187 714 SMART serkin_6 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05187 714 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 369 422 IPR024678 GO:0004674|GO:0005524
Trre13g05187 714 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 641 - -
Trre13g05187 714 MobiDBLite consensus disorder prediction 655 669 - -
Trre13g05187 714 ProSiteProfiles Protein kinase domain profile. 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05187 714 Coils Coil 610 630 - -
Trre13g05187 714 FunFam Probable serine/threonine-protein kinase WNK1 5 101 - -
Trre13g05187 714 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05187 714 FunFam probable serine/threonine-protein kinase WNK9 103 282 - -
Trre13g05187 714 SUPERFAMILY Protein kinase-like (PK-like) 23 278 IPR011009 -
Trre13g05187 714 Gene3D - 366 462 - -
Trre13g05187 714 CDD STKc_WNK 18 277 - -
Trre13g05187 714 Gene3D Transferase(Phosphotransferase) domain 1 103 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05187 Trre-Chr13 57338497 57341524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05187 1 502 MAP Kinase Kinase Kinase AT3G22420 57.248 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre13g05187 Pkinase 6.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05187 K08867 - gmx:100775959 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05187 13 57338497 57341524 Trre13g05187 13 57338497 57341524 ECH
Trre13g05187 13 57338497 57341524 Trre1g03935 1 43918087 43921213 PCT