Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05183 ATGGCGGACAAAGCTGTTACCATCAGGACCAGGAAGTTCCTCACCAACCGCCTCCTTTCACGAAAGCAATTCGTTGTTGAAGCTAATCATCCAGGGAAACCAAATGTTTCTAAGGTTGAGCTTAAGGAAAAGCTGGCAACAATGTATGGAGTGAAGGACAATGCTGTGTTTGTCTTCGGATTCCGAACACAATTTGGAGGTGGCAAATCAACTGGTTTTGGTTTGATTTATGATTCTGTTGAAAGTGCAAAGAAGTATGAGCCTAAGTACAGGCTTATCAGGAATGGTCTTGACACCAAAGTTGAGAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTATGAAGATTCGTGGTGTGAAGAAGACCAAGGCCTCTGATGCTGCTAAGGGTGGAAAAAAGAAATAA 411 0.4258 MADKAVTIRTRKFLTNRLLSRKQFVVEANHPGKPNVSKVELKEKLATMYGVKDNAVFVFGFRTQFGGGKSTGFGLIYDSVESAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAMKIRGVKKTKASDAAKGGKKK 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05183 136 Hamap 30S ribosomal protein S24e [rps24e]. 4 105 IPR001976 GO:0003735|GO:0005840|GO:0006412
Trre13g05183 136 Gene3D - 1 131 - -
Trre13g05183 136 MobiDBLite consensus disorder prediction 101 136 - -
Trre13g05183 136 Pfam Ribosomal protein S24e 25 102 IPR001976 GO:0003735|GO:0005840|GO:0006412
Trre13g05183 136 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 107 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trre13g05183 136 ProSitePatterns Ribosomal protein S24e signature. 65 87 IPR018098 -
Trre13g05183 136 FunFam 40S ribosomal protein S24 1 136 - -
Trre13g05183 136 PANTHER 40S RIBOSOMAL PROTEIN S24 1 130 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05183 Trre-Chr13 57310728 57313129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05183 1 131 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 78.030 7.66e-72 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05183 K02974 - aew:130786212 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05183 13 57310728 57313129 Trre13g05183 13 57310728 57313129 ECH
Trre13g05183 13 57310728 57313129 Trre1g03953 1 44280376 44282074 PCT