Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05182 ATGGCTTCACAGCAACACGACACCGTTTTCCCCGATGAAGACATCGACGACGAAGACGAAGAATTTCACGAATACGAAGAAGAAGATGAAGAAGAAGACGATGTTTTAGTCGAAGACGAAGAAAACAATCCTTCTGCTTCTATCTCCGCTCCCTCCGTCACTGTTGCCGTTCCCGGTTCCGTCATCTCAAACGGAGAAACCAGACCTCCAATTTTAACTCCAACCGCAACAACGATCGTTTTCGCAAACTCTTTCTCCGATTCAAAACGCCAACGTTTGGATCAAATTGAAGAGAAGAAACCTCTGGAAGATTCACGTAAGCTTTTTCAACGTCTATGGACCGACGAAGACGAGATGGAGCTGTTACAAGGTTTTCTCGATTACACAACGCAGAGAGGTTCTTCTCATCACAACGACACCGCTCAATTCTACGATCAAATCAAATCGAAACTCCAACTCGATTTCAACAAGAACCAGCTCGTAGAGAAGATCCGAAGGTTGAAGAAGAAATACCGAAACGTTCTAAACAAAATCAGTTCCGGTAAGGAATTTGTCTTCAAAACCGCTCACGATCAAGCTACTTTTGAAATCTCTCGCAAGATCTGGAACAACGTGGCGCCAATCGCCGGTGATATTGCCATTGACGACGAAGAAATCAACCTCAATCCTAGTCCCAACCCTAACCTCAATTTCACTCCCGTAATTCTCAAGTCTGAATCAACTTCGCATACGCGAAAGCGTTCACGGCCTCGATCTGCCATCAGAAGCTTCGAGAAACGTGAATCAAATGATGCATCAATCAGAGATCGTGATTATCTCAATATCAACCTCAACAATCCTAATCCATTTCCTAATCATAATTTTAATCTTAATCCTAATCCTGTTGCTAATCCTATCATAGCTACTACTTCCGCTACTGTTATCAATACAGCAACAACAACAACAACACCTACAATTACTGCTACTCCTAATACTAATCCTGCAGTTAATGCTAATAATTATAGTAACAATTGTAGTAGTAACATTGGGAACGGTGTAGCAGGTGTGATTGAAGAGACAGTGAGGAGTTGTTTATCGCCGTTGTTGAAGGAATTGATGACCAATGCAATGGGAGGACCGTTCGGAGCAAGAGGCAGAGGCGGTGGTGGTTTCGCGATGAATCCGTTGCAGTTGATGAATTTAGGTTTTGGAGAAGTTGTGGATGAGAAATGGAGGAAGCAACAGATTTTGGAATTGGAAGTGTATTCAAAGAGATTGGAATTAGTTCAAGATCAGATCAAAGCATCTATTGATGAATTGCGTTCGGTTGGTGGATCAACCTTTTAG 1326 0.4253 MASQQHDTVFPDEDIDDEDEEFHEYEEEDEEEDDVLVEDEENNPSASISAPSVTVAVPGSVISNGETRPPILTPTATTIVFANSFSDSKRQRLDQIEEKKPLEDSRKLFQRLWTDEDEMELLQGFLDYTTQRGSSHHNDTAQFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKISSGKEFVFKTAHDQATFEISRKIWNNVAPIAGDIAIDDEEINLNPSPNPNLNFTPVILKSESTSHTRKRSRPRSAIRSFEKRESNDASIRDRDYLNINLNNPNPFPNHNFNLNPNPVANPIIATTSATVINTATTTTTPTITATPNTNPAVNANNYSNNCSSNIGNGVAGVIEETVRSCLSPLLKELMTNAMGGPFGARGRGGGGFAMNPLQLMNLGFGEVVDEKWRKQQILELEVYSKRLELVQDQIKASIDELRSVGGSTF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05182 441 MobiDBLite consensus disorder prediction 238 262 - -
Trre13g05182 441 Coils Coil 157 177 - -
Trre13g05182 441 Pfam Protein of unknown function, DUF573 109 203 IPR007592 GO:0006355
Trre13g05182 441 MobiDBLite consensus disorder prediction 11 40 - -
Trre13g05182 441 MobiDBLite consensus disorder prediction 1 51 - -
Trre13g05182 441 PANTHER BNAANNG10740D PROTEIN-RELATED 17 432 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05182 Trre-Chr13 57306431 57307756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05182 1 436 GeBP Transcription Factor Family AT5G28040 39.829 1.52e-87 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre13g05182 DUF573 1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05182 - - psat:127132285 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05182 13 57306431 57307756 Trre1g03957 1 44318438 44319532 PCT