Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05179 ATGACACCATTACTGTTCACAGTGCGGAGGCGGCCACCAGTGTTGGTGCCACCGGCTGCTTCCACTCCTTCCGGAGTTAAACTACTATCCGATATAGATGATCAACAAGGCCTACGTTTCAATATTCCTTTCATATTTATTTATCGTCATGAACCATCAATGATGGGGAAAGATCCTGTTAAAGTTCTTAAACATGCACTCTCAAAAACACTTGTTTATTACTATCCATTTGCAGGAAGGATTAGAGAGGGTGTTGGGCGCAAGTTGATGGTAGATTGTACCGGCGAAGGTGTCATGTTTGTTGAAGCTGAAGCTGATGTAACACTTGATCAATTTGGTGAATCTCTGCAACCACCATTCCCTTGCTTCCAAGAACTTCTACATGATGTTGCTGACTCCGAAATAATTATTGACCGTCCCATTCGACTCATACAGGTCACACGTCTCAAGTGTGGTGGCTTCATTCTAGTTTTGTATTTGAACCATATAATGAGCGATGGAGCTGGTACGAAACAATTCATGAATGCCTGGACAGAAATGGCTTTAGGAGCACATATACCTTCCATTCAACCTGTGTGGCATAGGGAGATTTTAATGGCAAGAGATCCACCACAAATTACATGCAACCATCGTGAATATGAACAAACACTTTGGCCAAATACCATCAAGGAAGAAAATACTATCAACATAGTCCATCAATCTTTCTTCTTTAGATCTTCTGATATAGCTGCACTTCGTCGCTTGGTTCCACATCAATGTACTACATTTGATGTTATCACTGCATGTTTTTGGTGTTGCCGCACAAAAGCATTGCAGTTACAACCAGATGAAGAGGTGCGAATGATGTGCATCGTCAATGCACGCCCGAGGTTTAGTGATAAACATTCACTTGACGGGTATTATGGTAACTGTTTTGCTTATCCGGCGACCATCACCACTGCAGGGAAGCTTTGTGAAAACGGACTTGGTTATGCAGTGGAATTGATACGAAAAGCAAAAGTAGAAGTTACAGAGGAATACATGCATTCTGTGGCAGATCTTATGGTTATTACGGAGCGATGTTTATTTACAACTATAGGGTCTTGTATTATTTCTGATCTCACTCGTGCTAAGTTTAGAGAAGTAAATTTTGGATGGGGTGAAGCGGTGTATGGTGGAGTTGCAAAAGGTGGAGCTGGACCTTTTCCTGGTGTAACCTATATTGTCCCACATAAGAATGTAAAAGGAGAAGAAGGTTTGATATTACCAATTAGTTTGTCCTCTGAAGATATGAAGAGGTTTGCTAAAGAGTTAGATAAAATGCTTGGTAGATGA 1314 0.4117 MTPLLFTVRRRPPVLVPPAASTPSGVKLLSDIDDQQGLRFNIPFIFIYRHEPSMMGKDPVKVLKHALSKTLVYYYPFAGRIREGVGRKLMVDCTGEGVMFVEAEADVTLDQFGESLQPPFPCFQELLHDVADSEIIIDRPIRLIQVTRLKCGGFILVLYLNHIMSDGAGTKQFMNAWTEMALGAHIPSIQPVWHREILMARDPPQITCNHREYEQTLWPNTIKEENTINIVHQSFFFRSSDIAALRRLVPHQCTTFDVITACFWCCRTKALQLQPDEEVRMMCIVNARPRFSDKHSLDGYYGNCFAYPATITTAGKLCENGLGYAVELIRKAKVEVTEEYMHSVADLMVITERCLFTTIGSCIISDLTRAKFREVNFGWGEAVYGGVAKGGAGPFPGVTYIVPHKNVKGEEGLILPISLSSEDMKRFAKELDKMLGR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05179 437 Gene3D - 7 212 IPR023213 -
Trre13g05179 437 Pfam Transferase family 15 433 - -
Trre13g05179 437 Gene3D - 213 431 IPR023213 -
Trre13g05179 437 PANTHER ACYL TRANSFERASE 4 6 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05179 Trre-Chr13 57266921 57270526 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05179 11 431 Monolignol Biosynthesis Gene Families AT5G48930 29.385 2.75e-48 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05179 K19861 - gmx:100792864 568.54