Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05176 ATGACTTCATCACCATTACTGTTCACAGTGCGGAGGCGGCCACCAGTGTTGGTGCCACCGGCGGCTTCCACTCCTTTCGAAGTTAAACTACTATCCGATATAGATGATCAACAAGGCCTCCGTTTCAATATTCCTTTGATATTTGTCTATCGTCATGAACCATCAATGACACAGAAAGATCCTGTTAAAGTTCTTAAACATGCACTCTCAAAAACACTTGTTTATTACTATCCATTTGCAGGAAGGATTAGAGAGGGTGCCGGTCGAAAGTTGATGGTGGATTGTACTGGTGAAGGTGTCATGTTCATTGAAGCTGAAGCTGATGTAACACTTGATCAATTTGGTGACTCTCTGCAACCACCATTTCCTTGCTTCCATGAACTTCTACATGATGTTGCAGACTCTGATTTAATTATTGACCGTCCCATTCGACTTATACAGGTCACACGTCTCAAGTGTGGTGGCTTCATTATAGTCTTGTATTTGAACCATATAATGAGCGATGGAGCTGGTACGAAACAATTCATGAATGCCTGGACAGAAATGGCTTTAGGAGCACATCAACCTTCCATTCAACCTGTGTGGCATAGGGAGATTTTAATGGCAAGAGATCCACCACAAATTACATGCAACCATCGTGAATACGAACAAACACTTTGGCCAAATACCATCAAGGAAGAAAATACTATCAACATAGTCCATCAATCTTTCTTCTTTAGATCTTCTGATATAGCTGCACTTCGTCGCTTGGTTCCACATCAATGTACTACGTTTGATGTTATCACTGCATGTTTTTGGTGGTGCCGCACAAAAGCATTGCAGTTACAACCAGATGAAGAGGTGCGAATGATGTGCATCGTCAATGCACGCCCGAGGTTTAGTGATAAACATTCACTTGACGGGTATTATGGTAACTGTTTTGCTTATCCGGCGACCATCACCACTGCAGGGAAGCTTTGTGAAAACGGATTTGGTTATGCAGTGGAATTAATACAAAAAGCAAAAGTAGAAGTTACAGAGGAATACATGCATTCTGTGGCAGATTTTATGGTTATTATGGAACGTTGTTTATTTACAACTATAGGGTCTTGTATTATTTCTGATCTCACTCGTGCTAACTTTAGAGAAGTGAATTTTGGATGGGGTGAAGCAGTGTATGGTGGAGTTGCAAAAGGTGGAGCTGGGCCTTTTCCTGGTGCAACCTATATTGTCCCACATAAGAATGTAAAAGGAGAAGACGGTTTGATATTACCAATTTGTTTGTCCTCTGAAGATATGAAGAGGTTTGCTAAAGAGTTAGATGAGATGCTTGGCAAGGCCGACCCTGCGGGTGTGCATGGTGAGCCACCACGCATGATCTCAAAAATTTAA 1371 0.4179 MTSSPLLFTVRRRPPVLVPPAASTPFEVKLLSDIDDQQGLRFNIPLIFVYRHEPSMTQKDPVKVLKHALSKTLVYYYPFAGRIREGAGRKLMVDCTGEGVMFIEAEADVTLDQFGDSLQPPFPCFHELLHDVADSDLIIDRPIRLIQVTRLKCGGFIIVLYLNHIMSDGAGTKQFMNAWTEMALGAHQPSIQPVWHREILMARDPPQITCNHREYEQTLWPNTIKEENTINIVHQSFFFRSSDIAALRRLVPHQCTTFDVITACFWWCRTKALQLQPDEEVRMMCIVNARPRFSDKHSLDGYYGNCFAYPATITTAGKLCENGFGYAVELIQKAKVEVTEEYMHSVADFMVIMERCLFTTIGSCIISDLTRANFREVNFGWGEAVYGGVAKGGAGPFPGATYIVPHKNVKGEDGLILPICLSSEDMKRFAKELDEMLGKADPAGVHGEPPRMISKI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05176 456 Gene3D - 9 214 IPR023213 -
Trre13g05176 456 PANTHER ACYL TRANSFERASE 4 8 437 - -
Trre13g05176 456 Gene3D - 215 433 IPR023213 -
Trre13g05176 456 Pfam Transferase family 18 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05176 Trre-Chr13 57248325 57250768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05176 13 436 Monolignol Biosynthesis Gene Families AT5G48930 29.186 2.55e-48 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05176 K19861 - gmx:100792864 558.525