Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05175 ATGGCTTCATCTCCATTGATGTTCACAGTGTGGAGGTCCCAACCAGAGTTGGTGCGTCCAGCTTCACCCACTCCTCGCGAAGTTAAATTACTATCCGATATAGATGATCAAGAAGGCCTCCGTTTCAATCTTCCATTCGTATTTGTCTTTCGTCACGAACCATCAATGACAAAGAAAGATCCTATTAAAGTTCTTAAACATGCACTTTCAAAAACACTTGTTTATTACTATCCAGGTGCAGGAAGGATTAGGGAGGGTGTTGGGCGCAAGTTGATGGTGGATTGTACTGGTGAAGGTGTCATGTTCATTGAAGCTGAAGCTGATATAACACTTGATCAATTTGGTGATGCTCTGCAACCTCCATTCCCTTGTTTCCAAGAAATTCTACACGATGTTCCTGGCTCAGAATATATTATTGATCGTCCGATTCGACTTATACAGGTCACACGTCTCAAATGTGGTGGTTTTATATTGGCCTTGAGTTTAAACCATACACTAGGCGATGCAGTTGGTTTAAGACTATTCATAAATACATGGGCAGAAATTGCTCGAGGAGCAAATCAACCTTCTATTCTACCTGTGTGGCGTAGAGAGATCCTAATTGCAAGAGACCCACCACACATTACATGCAACCATCGTGAATATGAACAAATTATACTTCCTTCAAATACCATCATCAAGGAAGAAGATACTATTACCACAATCCATCAATCTTTCTTCTTTACACCTGCTCACATAGCTGCAATTCGTTGTTTGGTTCCACTTCATCTTCGTCAATGCACTACATTCGATCTTATCGCTGCATGCTATTGGCGTTGCCGCACAAAAGCATTGCAGTTAAAGCCAGAGGAAGAGGCTCGAATAATGTGCGTCGTTGATGCACGCTCGAGGTTTGTTGCTAACAATTCGTCACTTGTTGGATATTATGGTAATTGTATTGCTTTCCCTGCGGCGGTCACCACCGCAGGGAAGCTTTGTGGAAACCCATTAGGTTTTGCAATAGAGTTGATAAGAAAAGCAAAAGCTCAAGTTACAGAGGAATACATGCATTCTGTGGCAGATCTTATGGTTATTAAGGAACGATGTTCATTTACAGATTTAAGATCTTGTATTGTGTCAGATTGGACTCGTGCTAAGTTTGCAGAAGTTGATTTTGGATGGGGTGGACCAGTGTATAGTGGAGCTGCAAAAGGTGGACTTGGATATTTTTCTGGAGGAACCTTTATTGTCCCACATAAGAATGCAAAAGGAGAAGAAGGTCTGATATTACCAATTTGCTTGCCATATGAAGATATGAAGAGGTTTGCCAAAGAGTTAGATGAAATGCTTGGTAGCCAAAATCATACTATAACATCTGCTATATAG 1365 0.411 MASSPLMFTVWRSQPELVRPASPTPREVKLLSDIDDQEGLRFNLPFVFVFRHEPSMTKKDPIKVLKHALSKTLVYYYPGAGRIREGVGRKLMVDCTGEGVMFIEAEADITLDQFGDALQPPFPCFQEILHDVPGSEYIIDRPIRLIQVTRLKCGGFILALSLNHTLGDAVGLRLFINTWAEIARGANQPSILPVWRREILIARDPPHITCNHREYEQIILPSNTIIKEEDTITTIHQSFFFTPAHIAAIRCLVPLHLRQCTTFDLIAACYWRCRTKALQLKPEEEARIMCVVDARSRFVANNSSLVGYYGNCIAFPAAVTTAGKLCGNPLGFAIELIRKAKAQVTEEYMHSVADLMVIKERCSFTDLRSCIVSDWTRAKFAEVDFGWGGPVYSGAAKGGLGYFSGGTFIVPHKNAKGEEGLILPICLPYEDMKRFAKELDEMLGSQNHTITSAI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05175 454 Gene3D - 223 439 IPR023213 -
Trre13g05175 454 Pfam Transferase family 14 441 - -
Trre13g05175 454 Gene3D - 8 217 IPR023213 -
Trre13g05175 454 PANTHER ACYL TRANSFERASE 4 7 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05175 Trre-Chr13 57242043 57245229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05175 17 442 Monolignol Biosynthesis Gene Families AT5G48930 30.493 2.47e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05175 K19861 - gmx:100792864 577.785